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6L8U

Crystal structure of human BCDIN3D in complex with SAH

Functional Information from GO Data
ChainGOidnamespacecontents
A0001510biological_processRNA methylation
A0005515molecular_functionprotein binding
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008168molecular_functionmethyltransferase activity
A0008171molecular_functionO-methyltransferase activity
A0008173molecular_functionRNA methyltransferase activity
A0008175molecular_functiontRNA methyltransferase activity
A0010586biological_processmiRNA metabolic process
A0030488biological_processtRNA methylation
A0031054biological_processpre-miRNA processing
A0032259biological_processmethylation
A0070883molecular_functionpre-miRNA binding
A0090486molecular_functionsmall RNA 2'-O-methyltransferase activity
A2000632biological_processnegative regulation of pre-miRNA processing
B0001510biological_processRNA methylation
B0005515molecular_functionprotein binding
B0005654cellular_componentnucleoplasm
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008168molecular_functionmethyltransferase activity
B0008171molecular_functionO-methyltransferase activity
B0008173molecular_functionRNA methyltransferase activity
B0008175molecular_functiontRNA methyltransferase activity
B0010586biological_processmiRNA metabolic process
B0030488biological_processtRNA methylation
B0031054biological_processpre-miRNA processing
B0032259biological_processmethylation
B0070883molecular_functionpre-miRNA binding
B0090486molecular_functionsmall RNA 2'-O-methyltransferase activity
B2000632biological_processnegative regulation of pre-miRNA processing
C0001510biological_processRNA methylation
C0005515molecular_functionprotein binding
C0005654cellular_componentnucleoplasm
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0008168molecular_functionmethyltransferase activity
C0008171molecular_functionO-methyltransferase activity
C0008173molecular_functionRNA methyltransferase activity
C0008175molecular_functiontRNA methyltransferase activity
C0010586biological_processmiRNA metabolic process
C0030488biological_processtRNA methylation
C0031054biological_processpre-miRNA processing
C0032259biological_processmethylation
C0070883molecular_functionpre-miRNA binding
C0090486molecular_functionsmall RNA 2'-O-methyltransferase activity
C2000632biological_processnegative regulation of pre-miRNA processing
D0001510biological_processRNA methylation
D0005515molecular_functionprotein binding
D0005654cellular_componentnucleoplasm
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0008168molecular_functionmethyltransferase activity
D0008171molecular_functionO-methyltransferase activity
D0008173molecular_functionRNA methyltransferase activity
D0008175molecular_functiontRNA methyltransferase activity
D0010586biological_processmiRNA metabolic process
D0030488biological_processtRNA methylation
D0031054biological_processpre-miRNA processing
D0032259biological_processmethylation
D0070883molecular_functionpre-miRNA binding
D0090486molecular_functionsmall RNA 2'-O-methyltransferase activity
D2000632biological_processnegative regulation of pre-miRNA processing
Functional Information from PDB Data
site_idAC1
Number of Residues17
Detailsbinding site for residue SAH A 1001
ChainResidue
APHE31
ALEU134
AASP135
APHE136
AMET164
ASER165
AILE166
AILE170
AHOH2001
AGLY32
AASN33
AARG46
AGLY74
AASN76
ALEU80
AASP110
AILE111

site_idAC2
Number of Residues18
Detailsbinding site for residue SAH B 1001
ChainResidue
BPHE31
BGLY32
BASN33
BTYR37
BARG46
BGLY74
BASN76
BASP110
BILE111
BLEU134
BASP135
BPHE136
BMET137
BMET164
BSER165
BILE166
BTRP169
BHOH2001

site_idAC3
Number of Residues16
Detailsbinding site for residue SAH C 1001
ChainResidue
CPHE31
CGLY32
CTYR37
CSER38
CARG46
CGLY74
CASN76
CLEU80
CASP110
CILE111
CLEU134
CASP135
CPHE136
CMET164
CSER165
CILE166

site_idAC4
Number of Residues18
Detailsbinding site for residue SAH D 1001
ChainResidue
DPHE31
DGLY32
DASN33
DARG46
DGLY74
DASN76
DLEU80
DASP110
DILE111
DLEU134
DASP135
DPHE136
DMET164
DSER165
DILE166
DTRP169
DILE170
DHOH2001

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues20
DetailsBINDING: BINDING => ECO:0000269|PubMed:31919512, ECO:0000312|PDB:6L8U
ChainResidueDetails
DASN76
DARG118
DLYS143
DLEU172
AARG46
AASN76
AARG118
ALYS143
ALEU172
BARG46
BASN76
BARG118
BLYS143
BLEU172
CARG46
CASN76
CARG118
CLYS143
CLEU172
DARG46

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PDB entries from 2024-06-12

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