6KZ8

Crystal structure of plant Phospholipase D alpha complex with phosphatidic acid

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003824	molecular_function	catalytic activity
A	0004620	molecular_function	glycerophospholipase activity
A	0004630	molecular_function	D-type glycerophospholipase activity
A	0005096	molecular_function	GTPase activator activity
A	0005509	molecular_function	calcium ion binding
A	0005515	molecular_function	protein binding
A	0005546	molecular_function	phosphatidylinositol-4,5-bisphosphate binding
A	0005634	cellular_component	nucleus
A	0005737	cellular_component	cytoplasm
A	0005739	cellular_component	mitochondrion
A	0005773	cellular_component	vacuole
A	0005829	cellular_component	cytosol
A	0005886	cellular_component	plasma membrane
A	0006629	biological_process	lipid metabolic process
A	0006631	biological_process	fatty acid metabolic process
A	0009395	biological_process	phospholipid catabolic process
A	0009506	cellular_component	plasmodesma
A	0009507	cellular_component	chloroplast
A	0009737	biological_process	response to abscisic acid
A	0009738	biological_process	abscisic acid-activated signaling pathway
A	0009789	biological_process	positive regulation of abscisic acid-activated signaling pathway
A	0009845	biological_process	seed germination
A	0009873	biological_process	ethylene-activated signaling pathway
A	0010119	biological_process	regulation of stomatal movement
A	0010358	biological_process	leaf shaping
A	0016020	cellular_component	membrane
A	0016042	biological_process	lipid catabolic process
A	0016787	molecular_function	hydrolase activity
A	0030136	cellular_component	clathrin-coated vesicle
A	0031410	cellular_component	cytoplasmic vesicle
A	0031966	cellular_component	mitochondrial membrane
A	0046470	biological_process	phosphatidylcholine metabolic process
A	0046872	molecular_function	metal ion binding
B	0003824	molecular_function	catalytic activity
B	0004620	molecular_function	glycerophospholipase activity
B	0004630	molecular_function	D-type glycerophospholipase activity
B	0005096	molecular_function	GTPase activator activity
B	0005509	molecular_function	calcium ion binding
B	0005515	molecular_function	protein binding
B	0005546	molecular_function	phosphatidylinositol-4,5-bisphosphate binding
B	0005634	cellular_component	nucleus
B	0005737	cellular_component	cytoplasm
B	0005739	cellular_component	mitochondrion
B	0005773	cellular_component	vacuole
B	0005829	cellular_component	cytosol
B	0005886	cellular_component	plasma membrane
B	0006629	biological_process	lipid metabolic process
B	0006631	biological_process	fatty acid metabolic process
B	0009395	biological_process	phospholipid catabolic process
B	0009506	cellular_component	plasmodesma
B	0009507	cellular_component	chloroplast
B	0009737	biological_process	response to abscisic acid
B	0009738	biological_process	abscisic acid-activated signaling pathway
B	0009789	biological_process	positive regulation of abscisic acid-activated signaling pathway
B	0009845	biological_process	seed germination
B	0009873	biological_process	ethylene-activated signaling pathway
B	0010119	biological_process	regulation of stomatal movement
B	0010358	biological_process	leaf shaping
B	0016020	cellular_component	membrane
B	0016042	biological_process	lipid catabolic process
B	0016787	molecular_function	hydrolase activity
B	0030136	cellular_component	clathrin-coated vesicle
B	0031410	cellular_component	cytoplasmic vesicle
B	0031966	cellular_component	mitochondrial membrane
B	0046470	biological_process	phosphatidylcholine metabolic process
B	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	18
Details	binding site for residue PA8 A 1101

Chain	Residue
A	TRP231
A	SER583
A	VAL584
A	ILE587
A	HIS661
A	ARG682
A	ASP689
A	LEU808
A	HOH1207
A	HOH1338
A	THR330
A	HIS332
A	ARG366
A	GLN522
A	TYR523
A	PRO575
A	GLU576
A	SER581

---

site_id	AC2
Number of Residues	4
Details	binding site for residue CA A 1102

Chain	Residue
A	ASP187
A	HIS372
A	HIS406
A	GLU722

---

site_id	AC3
Number of Residues	4
Details	binding site for residue CA B 901

Chain	Residue
B	ASP187
B	HIS372
B	HIS406
B	GLU722

---

site_id	AC4
Number of Residues	17
Details	binding site for residue PA8 B 902

Chain	Residue
B	TRP231
B	THR330
B	HIS332
B	ARG366
B	GLN522
B	TYR523
B	GLU576
B	SER581
B	SER583
B	VAL584
B	ILE587
B	HIS661
B	ARG682
B	ASP689
B	LEU808
B	HOH1040
B	HOH1087

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	78
Details	Domain: {"description":"PLD phosphodiesterase 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00153","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	54
Details	Domain: {"description":"PLD phosphodiesterase 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00153","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	12
Details	Active site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00153","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PubMed","id":"31619765","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6KZ8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6KZ9","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	6
Details	Binding site: {"evidences":[{"source":"PubMed","id":"31619765","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6KZ8","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---