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6KYP

X-ray structure of human PPARalpha ligand binding domain-GW9662-clofibric acid co-crystals obtained by delipidation and co-crystallization

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0004879molecular_functionnuclear receptor activity
A0005634cellular_componentnucleus
A0006355biological_processregulation of DNA-templated transcription
B0003677molecular_functionDNA binding
B0004879molecular_functionnuclear receptor activity
B0005634cellular_componentnucleus
B0006355biological_processregulation of DNA-templated transcription
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue GW9 A 501
ChainResidue
AILE241
ACYS276
ALEU321
AMET330
AVAL332
AGW9502

site_idAC2
Number of Residues7
Detailsbinding site for residue GW9 A 502
ChainResidue
ACYS275
AALA333
ATYR334
AGW9501
AALA250
AGLU251
ALEU254

site_idAC3
Number of Residues8
Detailsbinding site for residue GW9 A 503
ChainResidue
ALEU254
ALYS257
ALEU258
AASN261
AHIS274
ACYS275
ACYS278
AHIS457

site_idAC4
Number of Residues9
Detailsbinding site for residue E0O B 504
ChainResidue
BPHE273
BGLN277
BSER280
BTYR314
BPHE318
BLEU321
BMET355
BHIS440
BTYR464

site_idAC5
Number of Residues12
Detailsbinding site for Di-peptide GW9 B 501 and CYS B 276
ChainResidue
BILE241
BILE272
BPHE273
BHIS274
BCYS275
BGLN277
BCYS278
BTHR279
BSER280
BLEU321
BLEU331
BGW9502

site_idAC6
Number of Residues14
Detailsbinding site for Di-peptide GW9 B 502 and CYS B 275
ChainResidue
APHE421
BALA250
BGLU251
BLEU254
BARG271
BILE272
BPHE273
BHIS274
BCYS276
BGLN277
BCYS278
BTHR279
BTYR334
BGW9501

site_idAC7
Number of Residues14
Detailsbinding site for Di-peptide GW9 B 503 and CYS B 278
ChainResidue
BLEU254
BLYS257
BLEU258
BASN261
BILE263
BHIS274
BCYS275
BCYS276
BGLN277
BTHR279
BSER280
BVAL281
BGLU282
BHIS457

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:19116277, ECO:0007744|PDB:3ET1
ChainResidueDetails
BSER280
BTYR314
BTYR464
ASER280
ATYR314
ATYR464

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Essential for heterodimerization with RXRA
ChainResidueDetails
BLEU433
ALEU433

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PDB entries from 2024-06-12

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