6KYJ
Hybrid-Rubisco (rice RbcL and sorghum RbcS) in complex with sulfate ions
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0004497 | molecular_function | monooxygenase activity |
| A | 0009507 | cellular_component | chloroplast |
| A | 0009536 | cellular_component | plastid |
| A | 0009853 | biological_process | photorespiration |
| A | 0015977 | biological_process | carbon fixation |
| A | 0015979 | biological_process | photosynthesis |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| A | 0019253 | biological_process | reductive pentose-phosphate cycle |
| A | 0046872 | molecular_function | metal ion binding |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0004497 | molecular_function | monooxygenase activity |
| C | 0009507 | cellular_component | chloroplast |
| C | 0009536 | cellular_component | plastid |
| C | 0009853 | biological_process | photorespiration |
| C | 0015977 | biological_process | carbon fixation |
| C | 0015979 | biological_process | photosynthesis |
| C | 0016829 | molecular_function | lyase activity |
| C | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| C | 0019253 | biological_process | reductive pentose-phosphate cycle |
| C | 0046872 | molecular_function | metal ion binding |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0004497 | molecular_function | monooxygenase activity |
| E | 0009507 | cellular_component | chloroplast |
| E | 0009536 | cellular_component | plastid |
| E | 0009853 | biological_process | photorespiration |
| E | 0015977 | biological_process | carbon fixation |
| E | 0015979 | biological_process | photosynthesis |
| E | 0016829 | molecular_function | lyase activity |
| E | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| E | 0019253 | biological_process | reductive pentose-phosphate cycle |
| E | 0046872 | molecular_function | metal ion binding |
| G | 0000287 | molecular_function | magnesium ion binding |
| G | 0004497 | molecular_function | monooxygenase activity |
| G | 0009507 | cellular_component | chloroplast |
| G | 0009536 | cellular_component | plastid |
| G | 0009853 | biological_process | photorespiration |
| G | 0015977 | biological_process | carbon fixation |
| G | 0015979 | biological_process | photosynthesis |
| G | 0016829 | molecular_function | lyase activity |
| G | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| G | 0019253 | biological_process | reductive pentose-phosphate cycle |
| G | 0046872 | molecular_function | metal ion binding |
| S | 0009507 | cellular_component | chloroplast |
| S | 0009853 | biological_process | photorespiration |
| S | 0015977 | biological_process | carbon fixation |
| S | 0015979 | biological_process | photosynthesis |
| S | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| S | 0019253 | biological_process | reductive pentose-phosphate cycle |
| U | 0009507 | cellular_component | chloroplast |
| U | 0009853 | biological_process | photorespiration |
| U | 0015977 | biological_process | carbon fixation |
| U | 0015979 | biological_process | photosynthesis |
| U | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| U | 0019253 | biological_process | reductive pentose-phosphate cycle |
| W | 0009507 | cellular_component | chloroplast |
| W | 0009853 | biological_process | photorespiration |
| W | 0015977 | biological_process | carbon fixation |
| W | 0015979 | biological_process | photosynthesis |
| W | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| W | 0019253 | biological_process | reductive pentose-phosphate cycle |
| Y | 0009507 | cellular_component | chloroplast |
| Y | 0009853 | biological_process | photorespiration |
| Y | 0015977 | biological_process | carbon fixation |
| Y | 0015979 | biological_process | photosynthesis |
| Y | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| Y | 0019253 | biological_process | reductive pentose-phosphate cycle |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 A 501 |
| Chain | Residue |
| A | TRP66 |
| A | GLY381 |
| A | GLY403 |
| A | GLY404 |
| A | HOH621 |
| A | HOH711 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 502 |
| Chain | Residue |
| A | HOH641 |
| A | HOH748 |
| A | ARG295 |
| A | HIS298 |
| A | GLY329 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 503 |
| Chain | Residue |
| A | ARG134 |
| A | LYS305 |
| A | HIS310 |
| A | MET341 |
| A | HOH698 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 504 |
| Chain | Residue |
| A | THR26 |
| A | LYS81 |
| A | ARG83 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 505 |
| Chain | Residue |
| A | ASN442 |
| A | ARG446 |
| A | HOH808 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 506 |
| Chain | Residue |
| A | LYS356 |
| A | PHE364 |
| A | THR365 |
| A | HOH786 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 507 |
| Chain | Residue |
| A | LYS146 |
| A | PHE148 |
| A | HOH615 |
| A | HOH645 |
| A | HOH781 |
| E | GLU110 |
| site_id | AC8 |
| Number of Residues | 10 |
| Details | binding site for residue GOL A 508 |
| Chain | Residue |
| A | LYS227 |
| A | GLU231 |
| A | HOH696 |
| A | HOH759 |
| S | TYR7 |
| W | PHE44 |
| W | SER45 |
| W | TRP66 |
| W | THR67 |
| W | HOH210 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | binding site for residue GOL A 509 |
| Chain | Residue |
| A | GLU433 |
| A | ARG435 |
| S | GLN25 |
| site_id | AD1 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 E 501 |
| Chain | Residue |
| E | LYS175 |
| E | GLY381 |
| E | GLY403 |
| E | GLY404 |
| E | HOH614 |
| E | HOH681 |
| G | TRP66 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 E 502 |
| Chain | Residue |
| E | ARG295 |
| E | HIS298 |
| E | GLY329 |
| G | HOH757 |
| site_id | AD3 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 E 503 |
| Chain | Residue |
| E | ARG134 |
| E | LYS305 |
| E | HIS310 |
| E | MET341 |
| E | HOH655 |
| E | HOH731 |
| site_id | AD4 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 E 504 |
| Chain | Residue |
| E | THR26 |
| E | LYS81 |
| E | ARG83 |
| site_id | AD5 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 E 505 |
| Chain | Residue |
| E | ASN442 |
| E | GLU443 |
| E | ARG446 |
| site_id | AD6 |
| Number of Residues | 7 |
| Details | binding site for residue GOL E 506 |
| Chain | Residue |
| A | GLU110 |
| E | LYS146 |
| E | PHE148 |
| E | HOH602 |
| E | HOH604 |
| E | HOH665 |
| E | HOH714 |
| site_id | AD7 |
| Number of Residues | 10 |
| Details | binding site for residue GOL E 507 |
| Chain | Residue |
| E | TYR190 |
| E | LYS227 |
| E | GLU231 |
| E | HOH601 |
| E | HOH741 |
| U | SER45 |
| U | TRP66 |
| U | THR67 |
| U | HOH205 |
| W | TYR7 |
| site_id | AD8 |
| Number of Residues | 3 |
| Details | binding site for residue GOL E 508 |
| Chain | Residue |
| E | GLU433 |
| E | ARG435 |
| W | GLN25 |
| site_id | AD9 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 C 501 |
| Chain | Residue |
| C | TRP66 |
| C | GLY381 |
| C | GLY403 |
| C | GLY404 |
| C | HOH617 |
| C | HOH620 |
| site_id | AE1 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 C 502 |
| Chain | Residue |
| C | ARG295 |
| C | HIS298 |
| C | GLY329 |
| C | HOH608 |
| C | HOH754 |
| site_id | AE2 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 C 503 |
| Chain | Residue |
| C | ARG134 |
| C | LYS305 |
| C | HIS310 |
| C | MET341 |
| C | HOH645 |
| site_id | AE3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 C 504 |
| Chain | Residue |
| C | THR26 |
| C | LYS81 |
| C | ARG83 |
| site_id | AE4 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 C 505 |
| Chain | Residue |
| C | ASN442 |
| C | ARG446 |
| site_id | AE5 |
| Number of Residues | 7 |
| Details | binding site for residue GOL C 506 |
| Chain | Residue |
| C | SER145 |
| C | LYS146 |
| C | PHE148 |
| C | HOH624 |
| C | HOH680 |
| C | HOH704 |
| G | GLU110 |
| site_id | AE6 |
| Number of Residues | 10 |
| Details | binding site for residue GOL C 507 |
| Chain | Residue |
| C | LYS227 |
| C | GLU231 |
| C | HOH610 |
| C | HOH621 |
| C | HOH740 |
| U | TYR7 |
| Y | PHE44 |
| Y | SER45 |
| Y | TRP66 |
| Y | THR67 |
| site_id | AE7 |
| Number of Residues | 3 |
| Details | binding site for residue GOL C 508 |
| Chain | Residue |
| C | GLU433 |
| C | ARG435 |
| U | GLN25 |
| site_id | AE8 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 G 501 |
| Chain | Residue |
| E | TRP66 |
| G | GLY381 |
| G | GLY403 |
| G | GLY404 |
| G | HOH607 |
| site_id | AE9 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 G 502 |
| Chain | Residue |
| G | ARG295 |
| G | HIS298 |
| G | GLY329 |
| site_id | AF1 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 G 503 |
| Chain | Residue |
| G | ARG134 |
| G | LYS305 |
| G | HIS310 |
| G | MET341 |
| G | HOH665 |
| site_id | AF2 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 G 504 |
| Chain | Residue |
| G | THR26 |
| G | LYS81 |
| G | ARG83 |
| site_id | AF3 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 G 505 |
| Chain | Residue |
| G | ASN442 |
| G | ARG446 |
| site_id | AF4 |
| Number of Residues | 7 |
| Details | binding site for residue GOL G 506 |
| Chain | Residue |
| C | GLU110 |
| G | LYS146 |
| G | PHE148 |
| G | HOH605 |
| G | HOH640 |
| G | HOH657 |
| G | HOH722 |
| site_id | AF5 |
| Number of Residues | 10 |
| Details | binding site for residue GOL G 507 |
| Chain | Residue |
| G | TYR190 |
| G | LYS227 |
| G | GLU231 |
| G | HOH624 |
| G | HOH649 |
| G | HOH743 |
| S | SER45 |
| S | TRP66 |
| S | THR67 |
| Y | TYR7 |
| site_id | AF6 |
| Number of Residues | 3 |
| Details | binding site for residue GOL G 508 |
| Chain | Residue |
| G | GLN149 |
| G | ASP286 |
| G | HOH640 |
| site_id | AF7 |
| Number of Residues | 5 |
| Details | binding site for residue GOL G 509 |
| Chain | Residue |
| E | LEU270 |
| E | ILE301 |
| E | HOH740 |
| G | LEU270 |
| G | HOH761 |
Functional Information from PROSITE/UniProt
| site_id | PS00157 |
| Number of Residues | 9 |
| Details | RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE |
| Chain | Residue | Details |
| A | GLY196-GLU204 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 8 |
| Details | ACT_SITE: Proton acceptor => ECO:0000250 |
| Chain | Residue | Details |
| A | LYS175 | |
| A | HIS294 | |
| E | LYS175 | |
| E | HIS294 | |
| C | LYS175 | |
| C | HIS294 | |
| G | LYS175 | |
| G | HIS294 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | BINDING: in homodimeric partner => ECO:0000250 |
| Chain | Residue | Details |
| A | ASN123 | |
| E | ASN123 | |
| C | ASN123 | |
| G | ASN123 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 28 |
| Details | BINDING: BINDING => ECO:0000250 |
| Chain | Residue | Details |
| A | THR173 | |
| E | ASP203 | |
| E | GLU204 | |
| E | ARG295 | |
| E | HIS327 | |
| E | SER379 | |
| C | THR173 | |
| C | LYS177 | |
| C | ASP203 | |
| C | GLU204 | |
| C | ARG295 | |
| A | LYS177 | |
| C | HIS327 | |
| C | SER379 | |
| G | THR173 | |
| G | LYS177 | |
| G | ASP203 | |
| G | GLU204 | |
| G | ARG295 | |
| G | HIS327 | |
| G | SER379 | |
| A | ASP203 | |
| A | GLU204 | |
| A | ARG295 | |
| A | HIS327 | |
| A | SER379 | |
| E | THR173 | |
| E | LYS177 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | BINDING: via carbamate group => ECO:0000250 |
| Chain | Residue | Details |
| A | LYS201 | |
| E | LYS201 | |
| C | LYS201 | |
| G | LYS201 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | SITE: Transition state stabilizer => ECO:0000250 |
| Chain | Residue | Details |
| A | LYS334 | |
| E | LYS334 | |
| C | LYS334 | |
| G | LYS334 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | MOD_RES: N-acetylproline => ECO:0000250 |
| Chain | Residue | Details |
| A | PRO3 | |
| E | PRO3 | |
| C | PRO3 | |
| G | PRO3 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-carboxylysine => ECO:0000250 |
| Chain | Residue | Details |
| A | LYS201 | |
| E | LYS201 | |
| C | LYS201 | |
| G | LYS201 |
