Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6KYJ

Hybrid-Rubisco (rice RbcL and sorghum RbcS) in complex with sulfate ions

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0004497	molecular_function	monooxygenase activity
A	0009507	cellular_component	chloroplast
A	0009536	cellular_component	plastid
A	0009853	biological_process	photorespiration
A	0015977	biological_process	carbon fixation
A	0015979	biological_process	photosynthesis
A	0016491	molecular_function	oxidoreductase activity
A	0016829	molecular_function	lyase activity
A	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
A	0019253	biological_process	reductive pentose-phosphate cycle
A	0046872	molecular_function	metal ion binding
C	0000287	molecular_function	magnesium ion binding
C	0004497	molecular_function	monooxygenase activity
C	0009507	cellular_component	chloroplast
C	0009536	cellular_component	plastid
C	0009853	biological_process	photorespiration
C	0015977	biological_process	carbon fixation
C	0015979	biological_process	photosynthesis
C	0016491	molecular_function	oxidoreductase activity
C	0016829	molecular_function	lyase activity
C	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
C	0019253	biological_process	reductive pentose-phosphate cycle
C	0046872	molecular_function	metal ion binding
E	0000287	molecular_function	magnesium ion binding
E	0004497	molecular_function	monooxygenase activity
E	0009507	cellular_component	chloroplast
E	0009536	cellular_component	plastid
E	0009853	biological_process	photorespiration
E	0015977	biological_process	carbon fixation
E	0015979	biological_process	photosynthesis
E	0016491	molecular_function	oxidoreductase activity
E	0016829	molecular_function	lyase activity
E	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
E	0019253	biological_process	reductive pentose-phosphate cycle
E	0046872	molecular_function	metal ion binding
G	0000287	molecular_function	magnesium ion binding
G	0004497	molecular_function	monooxygenase activity
G	0009507	cellular_component	chloroplast
G	0009536	cellular_component	plastid
G	0009853	biological_process	photorespiration
G	0015977	biological_process	carbon fixation
G	0015979	biological_process	photosynthesis
G	0016491	molecular_function	oxidoreductase activity
G	0016829	molecular_function	lyase activity
G	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
G	0019253	biological_process	reductive pentose-phosphate cycle
G	0046872	molecular_function	metal ion binding
S	0009507	cellular_component	chloroplast
S	0009853	biological_process	photorespiration
S	0015977	biological_process	carbon fixation
S	0015979	biological_process	photosynthesis
S	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
S	0019253	biological_process	reductive pentose-phosphate cycle
U	0009507	cellular_component	chloroplast
U	0009853	biological_process	photorespiration
U	0015977	biological_process	carbon fixation
U	0015979	biological_process	photosynthesis
U	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
U	0019253	biological_process	reductive pentose-phosphate cycle
W	0009507	cellular_component	chloroplast
W	0009853	biological_process	photorespiration
W	0015977	biological_process	carbon fixation
W	0015979	biological_process	photosynthesis
W	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
W	0019253	biological_process	reductive pentose-phosphate cycle
Y	0009507	cellular_component	chloroplast
Y	0009853	biological_process	photorespiration
Y	0015977	biological_process	carbon fixation
Y	0015979	biological_process	photosynthesis
Y	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
Y	0019253	biological_process	reductive pentose-phosphate cycle

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue SO4 A 501

Chain	Residue
A	TRP66
A	GLY381
A	GLY403
A	GLY404
A	HOH621
A	HOH711

site_id	AC2
Number of Residues	5
Details	binding site for residue SO4 A 502

Chain	Residue
A	HOH641
A	HOH748
A	ARG295
A	HIS298
A	GLY329

site_id	AC3
Number of Residues	5
Details	binding site for residue SO4 A 503

Chain	Residue
A	ARG134
A	LYS305
A	HIS310
A	MET341
A	HOH698

site_id	AC4
Number of Residues	3
Details	binding site for residue SO4 A 504

Chain	Residue
A	THR26
A	LYS81
A	ARG83

site_id	AC5
Number of Residues	3
Details	binding site for residue SO4 A 505

Chain	Residue
A	ASN442
A	ARG446
A	HOH808

site_id	AC6
Number of Residues	4
Details	binding site for residue SO4 A 506

Chain	Residue
A	LYS356
A	PHE364
A	THR365
A	HOH786

site_id	AC7
Number of Residues	6
Details	binding site for residue GOL A 507

Chain	Residue
A	LYS146
A	PHE148
A	HOH615
A	HOH645
A	HOH781
E	GLU110

site_id	AC8
Number of Residues	10
Details	binding site for residue GOL A 508

Chain	Residue
A	LYS227
A	GLU231
A	HOH696
A	HOH759
S	TYR7
W	PHE44
W	SER45
W	TRP66
W	THR67
W	HOH210

site_id	AC9
Number of Residues	3
Details	binding site for residue GOL A 509

Chain	Residue
A	GLU433
A	ARG435
S	GLN25

site_id	AD1
Number of Residues	7
Details	binding site for residue SO4 E 501

Chain	Residue
E	LYS175
E	GLY381
E	GLY403
E	GLY404
E	HOH614
E	HOH681
G	TRP66

site_id	AD2
Number of Residues	4
Details	binding site for residue SO4 E 502

Chain	Residue
E	ARG295
E	HIS298
E	GLY329
G	HOH757

site_id	AD3
Number of Residues	6
Details	binding site for residue SO4 E 503

Chain	Residue
E	ARG134
E	LYS305
E	HIS310
E	MET341
E	HOH655
E	HOH731

site_id	AD4
Number of Residues	3
Details	binding site for residue SO4 E 504

Chain	Residue
E	THR26
E	LYS81
E	ARG83

site_id	AD5
Number of Residues	3
Details	binding site for residue SO4 E 505

Chain	Residue
E	ASN442
E	GLU443
E	ARG446

site_id	AD6
Number of Residues	7
Details	binding site for residue GOL E 506

Chain	Residue
A	GLU110
E	LYS146
E	PHE148
E	HOH602
E	HOH604
E	HOH665
E	HOH714

site_id	AD7
Number of Residues	10
Details	binding site for residue GOL E 507

Chain	Residue
E	TYR190
E	LYS227
E	GLU231
E	HOH601
E	HOH741
U	SER45
U	TRP66
U	THR67
U	HOH205
W	TYR7

site_id	AD8
Number of Residues	3
Details	binding site for residue GOL E 508

Chain	Residue
E	GLU433
E	ARG435
W	GLN25

site_id	AD9
Number of Residues	6
Details	binding site for residue SO4 C 501

Chain	Residue
C	TRP66
C	GLY381
C	GLY403
C	GLY404
C	HOH617
C	HOH620

site_id	AE1
Number of Residues	5
Details	binding site for residue SO4 C 502

Chain	Residue
C	ARG295
C	HIS298
C	GLY329
C	HOH608
C	HOH754

site_id	AE2
Number of Residues	5
Details	binding site for residue SO4 C 503

Chain	Residue
C	ARG134
C	LYS305
C	HIS310
C	MET341
C	HOH645

site_id	AE3
Number of Residues	3
Details	binding site for residue SO4 C 504

Chain	Residue
C	THR26
C	LYS81
C	ARG83

site_id	AE4
Number of Residues	2
Details	binding site for residue SO4 C 505

Chain	Residue
C	ASN442
C	ARG446

site_id	AE5
Number of Residues	7
Details	binding site for residue GOL C 506

Chain	Residue
C	SER145
C	LYS146
C	PHE148
C	HOH624
C	HOH680
C	HOH704
G	GLU110

site_id	AE6
Number of Residues	10
Details	binding site for residue GOL C 507

Chain	Residue
C	LYS227
C	GLU231
C	HOH610
C	HOH621
C	HOH740
U	TYR7
Y	PHE44
Y	SER45
Y	TRP66
Y	THR67

site_id	AE7
Number of Residues	3
Details	binding site for residue GOL C 508

Chain	Residue
C	GLU433
C	ARG435
U	GLN25

site_id	AE8
Number of Residues	5
Details	binding site for residue SO4 G 501

Chain	Residue
E	TRP66
G	GLY381
G	GLY403
G	GLY404
G	HOH607

site_id	AE9
Number of Residues	3
Details	binding site for residue SO4 G 502

Chain	Residue
G	ARG295
G	HIS298
G	GLY329

site_id	AF1
Number of Residues	5
Details	binding site for residue SO4 G 503

Chain	Residue
G	ARG134
G	LYS305
G	HIS310
G	MET341
G	HOH665

site_id	AF2
Number of Residues	3
Details	binding site for residue SO4 G 504

Chain	Residue
G	THR26
G	LYS81
G	ARG83

site_id	AF3
Number of Residues	2
Details	binding site for residue SO4 G 505

Chain	Residue
G	ASN442
G	ARG446

site_id	AF4
Number of Residues	7
Details	binding site for residue GOL G 506

Chain	Residue
C	GLU110
G	LYS146
G	PHE148
G	HOH605
G	HOH640
G	HOH657
G	HOH722

site_id	AF5
Number of Residues	10
Details	binding site for residue GOL G 507

Chain	Residue
G	TYR190
G	LYS227
G	GLU231
G	HOH624
G	HOH649
G	HOH743
S	SER45
S	TRP66
S	THR67
Y	TYR7

site_id	AF6
Number of Residues	3
Details	binding site for residue GOL G 508

Chain	Residue
G	GLN149
G	ASP286
G	HOH640

site_id	AF7
Number of Residues	5
Details	binding site for residue GOL G 509

Chain	Residue
E	LEU270
E	ILE301
E	HOH740
G	LEU270
G	HOH761

Functional Information from PROSITE/UniProt

site_id	PS00157
Number of Residues	9
Details	RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE

Chain	Residue	Details
A	GLY196-GLU204

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	8
Details	Active site: {"description":"Proton acceptor","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	4
Details	Binding site: {"description":"in homodimeric partner","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	28
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	4
Details	Binding site: {"description":"via carbamate group","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	4
Details	Site: {"description":"Transition state stabilizer","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	4
Details	Modified residue: {"description":"N6-carboxylysine","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)