6KU3
Crystal structure of gibberellin 2-oxidase3 (GA2ox3)in rice
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0009416 | biological_process | response to light stimulus |
A | 0009685 | biological_process | gibberellin metabolic process |
A | 0045487 | biological_process | gibberellin catabolic process |
A | 0045543 | molecular_function | gibberellin 2-beta-dioxygenase activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0051213 | molecular_function | dioxygenase activity |
A | 0052634 | molecular_function | C-19 gibberellin 2-beta-dioxygenase activity |
B | 0009416 | biological_process | response to light stimulus |
B | 0009685 | biological_process | gibberellin metabolic process |
B | 0045487 | biological_process | gibberellin catabolic process |
B | 0045543 | molecular_function | gibberellin 2-beta-dioxygenase activity |
B | 0046872 | molecular_function | metal ion binding |
B | 0051213 | molecular_function | dioxygenase activity |
B | 0052634 | molecular_function | C-19 gibberellin 2-beta-dioxygenase activity |
C | 0009416 | biological_process | response to light stimulus |
C | 0009685 | biological_process | gibberellin metabolic process |
C | 0045487 | biological_process | gibberellin catabolic process |
C | 0045543 | molecular_function | gibberellin 2-beta-dioxygenase activity |
C | 0046872 | molecular_function | metal ion binding |
C | 0051213 | molecular_function | dioxygenase activity |
C | 0052634 | molecular_function | C-19 gibberellin 2-beta-dioxygenase activity |
D | 0009416 | biological_process | response to light stimulus |
D | 0009685 | biological_process | gibberellin metabolic process |
D | 0045487 | biological_process | gibberellin catabolic process |
D | 0045543 | molecular_function | gibberellin 2-beta-dioxygenase activity |
D | 0046872 | molecular_function | metal ion binding |
D | 0051213 | molecular_function | dioxygenase activity |
D | 0052634 | molecular_function | C-19 gibberellin 2-beta-dioxygenase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | binding site for residue GA4 A 401 |
Chain | Residue |
A | PRO90 |
A | PHE100 |
A | LYS308 |
A | TYR312 |
A | SO4410 |
D | LYS308 |
D | LYS309 |
D | TYR312 |
site_id | AC2 |
Number of Residues | 12 |
Details | binding site for residue GA4 A 402 |
Chain | Residue |
A | ARG179 |
A | HIS202 |
A | ASP204 |
A | PRO205 |
A | GLN206 |
A | PHE275 |
A | ALA311 |
A | TYR312 |
A | ARG320 |
A | AKG403 |
A | HOH505 |
A | TYR89 |
site_id | AC3 |
Number of Residues | 14 |
Details | binding site for residue AKG A 403 |
Chain | Residue |
A | ARG179 |
A | ASN181 |
A | TYR183 |
A | PHE199 |
A | HIS202 |
A | LEU211 |
A | HIS259 |
A | VAL261 |
A | ARG269 |
A | SER271 |
A | ILE273 |
A | GA4402 |
A | HOH504 |
A | HOH553 |
site_id | AC4 |
Number of Residues | 7 |
Details | binding site for residue GOL A 404 |
Chain | Residue |
A | VAL10 |
A | PRO14 |
A | ILE98 |
A | ASP103 |
A | MET104 |
A | GLY200 |
A | LEU316 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue GOL A 405 |
Chain | Residue |
A | TYR49 |
A | ALA222 |
A | ARG224 |
A | SER256 |
A | VAL257 |
A | LYS258 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue GOL A 406 |
Chain | Residue |
A | CYS186 |
A | ALA188 |
A | HOH536 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue GOL A 407 |
Chain | Residue |
A | GLY58 |
A | ALA60 |
A | THR63 |
A | HOH564 |
D | ASN56 |
D | ARG148 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 408 |
Chain | Residue |
A | SER95 |
A | LEU107 |
A | PRO184 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 409 |
Chain | Residue |
A | GLY215 |
A | THR216 |
A | SER217 |
A | ASN264 |
A | LYS267 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 410 |
Chain | Residue |
A | PRO90 |
A | LYS308 |
A | TYR312 |
A | GA4401 |
site_id | AD2 |
Number of Residues | 14 |
Details | binding site for residue GA4 B 401 |
Chain | Residue |
B | TYR89 |
B | ILE98 |
B | ARG179 |
B | HIS202 |
B | ASP204 |
B | PRO205 |
B | GLN206 |
B | PHE275 |
B | ALA311 |
B | TYR312 |
B | ARG320 |
B | AKG402 |
B | HOH505 |
B | HOH561 |
site_id | AD3 |
Number of Residues | 16 |
Details | binding site for residue AKG B 402 |
Chain | Residue |
B | ARG179 |
B | ASN181 |
B | TYR183 |
B | PHE199 |
B | HIS202 |
B | ASP204 |
B | LEU211 |
B | HIS259 |
B | VAL261 |
B | ARG269 |
B | SER271 |
B | ILE273 |
B | PHE275 |
B | GA4401 |
B | HOH537 |
B | HOH586 |
site_id | AD4 |
Number of Residues | 6 |
Details | binding site for residue GOL B 403 |
Chain | Residue |
B | TYR93 |
B | SER95 |
B | LYS96 |
B | TRP106 |
B | GLU108 |
B | GLN79 |
site_id | AD5 |
Number of Residues | 8 |
Details | binding site for residue GOL B 404 |
Chain | Residue |
B | ALA222 |
B | ARG224 |
B | SER256 |
B | VAL257 |
B | LYS258 |
B | HOH501 |
B | HOH543 |
B | HOH620 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue GOL B 405 |
Chain | Residue |
B | PRO90 |
B | ASP175 |
B | VAL177 |
B | LYS308 |
B | HOH512 |
C | GA4402 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 406 |
Chain | Residue |
B | THR216 |
B | SER217 |
B | ASN264 |
B | LYS267 |
site_id | AD8 |
Number of Residues | 12 |
Details | binding site for residue GA4 C 401 |
Chain | Residue |
C | TYR89 |
C | ARG179 |
C | HIS202 |
C | ASP204 |
C | PRO205 |
C | GLN206 |
C | PHE275 |
C | ALA311 |
C | TYR312 |
C | ARG320 |
C | AKG403 |
C | HOH509 |
site_id | AD9 |
Number of Residues | 9 |
Details | binding site for residue GA4 C 402 |
Chain | Residue |
B | PHE100 |
B | LYS308 |
B | TYR312 |
B | GOL405 |
B | HOH579 |
C | PRO90 |
C | PHE100 |
C | LYS308 |
C | TYR312 |
site_id | AE1 |
Number of Residues | 15 |
Details | binding site for residue AKG C 403 |
Chain | Residue |
C | ARG179 |
C | ASN181 |
C | TYR183 |
C | PHE199 |
C | HIS202 |
C | ASP204 |
C | LEU211 |
C | HIS259 |
C | VAL261 |
C | ARG269 |
C | SER271 |
C | ILE273 |
C | PHE275 |
C | GA4401 |
C | HOH525 |
site_id | AE2 |
Number of Residues | 6 |
Details | binding site for residue GOL C 404 |
Chain | Residue |
C | PRO90 |
C | ASP175 |
C | VAL177 |
C | LYS308 |
C | TYR312 |
C | HOH537 |
site_id | AE3 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 405 |
Chain | Residue |
C | GLN79 |
C | SER95 |
C | PRO184 |
site_id | AE4 |
Number of Residues | 13 |
Details | binding site for residue GA4 D 401 |
Chain | Residue |
D | TYR89 |
D | ARG179 |
D | HIS202 |
D | ASP204 |
D | PRO205 |
D | GLN206 |
D | PHE275 |
D | ALA311 |
D | TYR312 |
D | LEU316 |
D | ARG320 |
D | AKG402 |
D | HOH522 |
site_id | AE5 |
Number of Residues | 13 |
Details | binding site for residue AKG D 402 |
Chain | Residue |
D | ARG179 |
D | ASN181 |
D | TYR183 |
D | PHE199 |
D | HIS202 |
D | LEU211 |
D | HIS259 |
D | VAL261 |
D | ARG269 |
D | SER271 |
D | ILE273 |
D | GA4401 |
D | HOH524 |
site_id | AE6 |
Number of Residues | 2 |
Details | binding site for residue GOL D 403 |
Chain | Residue |
D | ILE13 |
D | CYS186 |
site_id | AE7 |
Number of Residues | 5 |
Details | binding site for residue GOL D 404 |
Chain | Residue |
D | THR216 |
D | SER217 |
D | ASN264 |
D | HOH538 |
D | HOH553 |
site_id | AE8 |
Number of Residues | 1 |
Details | binding site for residue SO4 D 405 |
Chain | Residue |
D | SER95 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:D4N500 |
Chain | Residue | Details |
A | TYR183 | |
A | SER271 | |
B | TYR183 | |
B | SER271 | |
C | TYR183 | |
C | SER271 | |
D | TYR183 | |
D | SER271 |
site_id | SWS_FT_FI2 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00805 |
Chain | Residue | Details |
A | HIS202 | |
C | ASP204 | |
C | HIS259 | |
C | ARG269 | |
D | HIS202 | |
D | ASP204 | |
D | HIS259 | |
D | ARG269 | |
A | ASP204 | |
A | HIS259 | |
A | ARG269 | |
B | HIS202 | |
B | ASP204 | |
B | HIS259 | |
B | ARG269 | |
C | HIS202 |