6KU3
Crystal structure of gibberellin 2-oxidase3 (GA2ox3)in rice
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0009416 | biological_process | response to light stimulus |
| A | 0009685 | biological_process | gibberellin metabolic process |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0045487 | biological_process | gibberellin catabolic process |
| A | 0045543 | molecular_function | gibberellin 2-beta-dioxygenase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0051213 | molecular_function | dioxygenase activity |
| B | 0009416 | biological_process | response to light stimulus |
| B | 0009685 | biological_process | gibberellin metabolic process |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0045487 | biological_process | gibberellin catabolic process |
| B | 0045543 | molecular_function | gibberellin 2-beta-dioxygenase activity |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0051213 | molecular_function | dioxygenase activity |
| C | 0009416 | biological_process | response to light stimulus |
| C | 0009685 | biological_process | gibberellin metabolic process |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0045487 | biological_process | gibberellin catabolic process |
| C | 0045543 | molecular_function | gibberellin 2-beta-dioxygenase activity |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0051213 | molecular_function | dioxygenase activity |
| D | 0009416 | biological_process | response to light stimulus |
| D | 0009685 | biological_process | gibberellin metabolic process |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0045487 | biological_process | gibberellin catabolic process |
| D | 0045543 | molecular_function | gibberellin 2-beta-dioxygenase activity |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0051213 | molecular_function | dioxygenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | binding site for residue GA4 A 401 |
| Chain | Residue |
| A | PRO90 |
| A | PHE100 |
| A | LYS308 |
| A | TYR312 |
| A | SO4410 |
| D | LYS308 |
| D | LYS309 |
| D | TYR312 |
| site_id | AC2 |
| Number of Residues | 12 |
| Details | binding site for residue GA4 A 402 |
| Chain | Residue |
| A | ARG179 |
| A | HIS202 |
| A | ASP204 |
| A | PRO205 |
| A | GLN206 |
| A | PHE275 |
| A | ALA311 |
| A | TYR312 |
| A | ARG320 |
| A | AKG403 |
| A | HOH505 |
| A | TYR89 |
| site_id | AC3 |
| Number of Residues | 14 |
| Details | binding site for residue AKG A 403 |
| Chain | Residue |
| A | ARG179 |
| A | ASN181 |
| A | TYR183 |
| A | PHE199 |
| A | HIS202 |
| A | LEU211 |
| A | HIS259 |
| A | VAL261 |
| A | ARG269 |
| A | SER271 |
| A | ILE273 |
| A | GA4402 |
| A | HOH504 |
| A | HOH553 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue GOL A 404 |
| Chain | Residue |
| A | VAL10 |
| A | PRO14 |
| A | ILE98 |
| A | ASP103 |
| A | MET104 |
| A | GLY200 |
| A | LEU316 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 405 |
| Chain | Residue |
| A | TYR49 |
| A | ALA222 |
| A | ARG224 |
| A | SER256 |
| A | VAL257 |
| A | LYS258 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue GOL A 406 |
| Chain | Residue |
| A | CYS186 |
| A | ALA188 |
| A | HOH536 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 407 |
| Chain | Residue |
| A | GLY58 |
| A | ALA60 |
| A | THR63 |
| A | HOH564 |
| D | ASN56 |
| D | ARG148 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 408 |
| Chain | Residue |
| A | SER95 |
| A | LEU107 |
| A | PRO184 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 409 |
| Chain | Residue |
| A | GLY215 |
| A | THR216 |
| A | SER217 |
| A | ASN264 |
| A | LYS267 |
| site_id | AD1 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 410 |
| Chain | Residue |
| A | PRO90 |
| A | LYS308 |
| A | TYR312 |
| A | GA4401 |
| site_id | AD2 |
| Number of Residues | 14 |
| Details | binding site for residue GA4 B 401 |
| Chain | Residue |
| B | TYR89 |
| B | ILE98 |
| B | ARG179 |
| B | HIS202 |
| B | ASP204 |
| B | PRO205 |
| B | GLN206 |
| B | PHE275 |
| B | ALA311 |
| B | TYR312 |
| B | ARG320 |
| B | AKG402 |
| B | HOH505 |
| B | HOH561 |
| site_id | AD3 |
| Number of Residues | 16 |
| Details | binding site for residue AKG B 402 |
| Chain | Residue |
| B | ARG179 |
| B | ASN181 |
| B | TYR183 |
| B | PHE199 |
| B | HIS202 |
| B | ASP204 |
| B | LEU211 |
| B | HIS259 |
| B | VAL261 |
| B | ARG269 |
| B | SER271 |
| B | ILE273 |
| B | PHE275 |
| B | GA4401 |
| B | HOH537 |
| B | HOH586 |
| site_id | AD4 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 403 |
| Chain | Residue |
| B | TYR93 |
| B | SER95 |
| B | LYS96 |
| B | TRP106 |
| B | GLU108 |
| B | GLN79 |
| site_id | AD5 |
| Number of Residues | 8 |
| Details | binding site for residue GOL B 404 |
| Chain | Residue |
| B | ALA222 |
| B | ARG224 |
| B | SER256 |
| B | VAL257 |
| B | LYS258 |
| B | HOH501 |
| B | HOH543 |
| B | HOH620 |
| site_id | AD6 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 405 |
| Chain | Residue |
| B | PRO90 |
| B | ASP175 |
| B | VAL177 |
| B | LYS308 |
| B | HOH512 |
| C | GA4402 |
| site_id | AD7 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 B 406 |
| Chain | Residue |
| B | THR216 |
| B | SER217 |
| B | ASN264 |
| B | LYS267 |
| site_id | AD8 |
| Number of Residues | 12 |
| Details | binding site for residue GA4 C 401 |
| Chain | Residue |
| C | TYR89 |
| C | ARG179 |
| C | HIS202 |
| C | ASP204 |
| C | PRO205 |
| C | GLN206 |
| C | PHE275 |
| C | ALA311 |
| C | TYR312 |
| C | ARG320 |
| C | AKG403 |
| C | HOH509 |
| site_id | AD9 |
| Number of Residues | 9 |
| Details | binding site for residue GA4 C 402 |
| Chain | Residue |
| B | PHE100 |
| B | LYS308 |
| B | TYR312 |
| B | GOL405 |
| B | HOH579 |
| C | PRO90 |
| C | PHE100 |
| C | LYS308 |
| C | TYR312 |
| site_id | AE1 |
| Number of Residues | 15 |
| Details | binding site for residue AKG C 403 |
| Chain | Residue |
| C | ARG179 |
| C | ASN181 |
| C | TYR183 |
| C | PHE199 |
| C | HIS202 |
| C | ASP204 |
| C | LEU211 |
| C | HIS259 |
| C | VAL261 |
| C | ARG269 |
| C | SER271 |
| C | ILE273 |
| C | PHE275 |
| C | GA4401 |
| C | HOH525 |
| site_id | AE2 |
| Number of Residues | 6 |
| Details | binding site for residue GOL C 404 |
| Chain | Residue |
| C | PRO90 |
| C | ASP175 |
| C | VAL177 |
| C | LYS308 |
| C | TYR312 |
| C | HOH537 |
| site_id | AE3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 C 405 |
| Chain | Residue |
| C | GLN79 |
| C | SER95 |
| C | PRO184 |
| site_id | AE4 |
| Number of Residues | 13 |
| Details | binding site for residue GA4 D 401 |
| Chain | Residue |
| D | TYR89 |
| D | ARG179 |
| D | HIS202 |
| D | ASP204 |
| D | PRO205 |
| D | GLN206 |
| D | PHE275 |
| D | ALA311 |
| D | TYR312 |
| D | LEU316 |
| D | ARG320 |
| D | AKG402 |
| D | HOH522 |
| site_id | AE5 |
| Number of Residues | 13 |
| Details | binding site for residue AKG D 402 |
| Chain | Residue |
| D | ARG179 |
| D | ASN181 |
| D | TYR183 |
| D | PHE199 |
| D | HIS202 |
| D | LEU211 |
| D | HIS259 |
| D | VAL261 |
| D | ARG269 |
| D | SER271 |
| D | ILE273 |
| D | GA4401 |
| D | HOH524 |
| site_id | AE6 |
| Number of Residues | 2 |
| Details | binding site for residue GOL D 403 |
| Chain | Residue |
| D | ILE13 |
| D | CYS186 |
| site_id | AE7 |
| Number of Residues | 5 |
| Details | binding site for residue GOL D 404 |
| Chain | Residue |
| D | THR216 |
| D | SER217 |
| D | ASN264 |
| D | HOH538 |
| D | HOH553 |
| site_id | AE8 |
| Number of Residues | 1 |
| Details | binding site for residue SO4 D 405 |
| Chain | Residue |
| D | SER95 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 420 |
| Details | Domain: {"description":"Fe2OG dioxygenase","evidences":[{"source":"PROSITE-ProRule","id":"PRU00805","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"D4N500","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 16 |
| Details | Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00805","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
