Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6KK0

Crystal structure of PDE4D catalytic domain complexed with compound 4e

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue M36 A 501
ChainResidue
ATYR159
APHE372
AZN502
AHOH657
AHOH702
AHIS160
AHIS164
AASP201
AMET273
AASP318
AMET357
ALYS367
ASER368

site_idAC2
Number of Residues7
Detailsbinding site for residue ZN A 502
ChainResidue
AHIS164
AHIS200
AASP201
AASP318
AM36501
AMG503
AHOH657

site_idAC3
Number of Residues7
Detailsbinding site for residue MG A 503
ChainResidue
AASP201
AZN502
AHOH655
AHOH657
AHOH659
AHOH663
AHOH702

site_idAC4
Number of Residues15
Detailsbinding site for residue M36 B 501
ChainResidue
BTYR159
BHIS160
BHIS164
BASP201
BMET273
BASP318
BPHE340
BMET357
BLYS367
BSER368
BGLY371
BPHE372
BZN502
BHOH641
BHOH672

site_idAC5
Number of Residues7
Detailsbinding site for residue ZN B 502
ChainResidue
BHIS164
BHIS200
BASP201
BASP318
BM36501
BMG503
BHOH641

site_idAC6
Number of Residues7
Detailsbinding site for residue MG B 503
ChainResidue
BASP201
BZN502
BHOH622
BHOH633
BHOH641
BHOH672
BHOH673

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDVdHpGvsNqF
ChainResidueDetails
AHIS200-PHE211

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000250|UniProtKB:Q07343
ChainResidueDetails
AHIS160
BHIS160

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7
ChainResidueDetails
AHIS160
AASN321
AGLN369
BHIS160
BASN321
BGLN369

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:2PW3
ChainResidueDetails
AHIS164
BHIS164

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:1XOR, ECO:0007744|PDB:2PW3
ChainResidueDetails
AHIS200
AASP318
BHIS200
BASP318

site_idSWS_FT_FI5
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0007744|PDB:1PTW
ChainResidueDetails
AASP201
APHE372
BASP201
BPHE372

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon