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6KDR

Crystal structure of human NRMT2 in complex with human centromere protein B peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0006480biological_processN-terminal protein amino acid methylation
A0008168molecular_functionmethyltransferase activity
B0006480biological_processN-terminal protein amino acid methylation
B0008168molecular_functionmethyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue SAH A 301
ChainResidue
ATYR76
APHE151
ATYR172
ASER173
ALEU174
AGLN175
AGLN190
ATRP191
AVAL192
AHIS195
AHOH429
AMET86
AHOH441
AGLY124
ASER125
AGLY126
AARG129
AASP146
AMET147
AMET148

site_idAC2
Number of Residues10
Detailsbinding site for residue GOL A 302
ChainResidue
ATRP191
AGLY194
AHIS195
AASP222
ASER237
AHOH442
AHOH451
AHOH452
DGLY1
DLYS3

site_idAC3
Number of Residues2
Detailsbinding site for residue CL A 303
ChainResidue
AARG246
AVAL256

site_idAC4
Number of Residues19
Detailsbinding site for residue SAH B 301
ChainResidue
BTYR76
BGLY124
BSER125
BGLY126
BARG129
BASP146
BMET147
BMET148
BPHE151
BTYR172
BSER173
BLEU174
BGLN175
BGLN190
BTRP191
BVAL192
BHIS195
BHOH425
BHOH458

site_idAC5
Number of Residues7
Detailsbinding site for residue GOL B 302
ChainResidue
BTRP191
BVAL192
BGLY194
BASP222
BSER237
EGLY1
ELYS3

site_idAC6
Number of Residues8
Detailsbinding site for residue GOL B 303
ChainResidue
BLYS213
BGLU214
BASN215
BGLY216
BHOH406
BHOH411
BHOH418
ELEU7

site_idAC7
Number of Residues1
Detailsbinding site for residue CL B 304
ChainResidue
BARG226

site_idAC8
Number of Residues5
Detailsbinding site for residue CL E 101
ChainResidue
AGLN160
BARG182
ELEU7
ETHR8
EHOH201

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30417120","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5UBB","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30417120","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsModified residue: {"description":"N-methylglycine; alternate","evidences":[{"source":"PubMed","id":"23978223","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

250059

PDB entries from 2026-03-04

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