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6KBN

Crystal structure of Vac8 (del 19-33) bound to Atg13

Functional Information from GO Data
ChainGOidnamespacecontents
A0000011biological_processvacuole inheritance
A0000045biological_processautophagosome assembly
A0000329cellular_componentfungal-type vacuole membrane
A0000407cellular_componentphagophore assembly site
A0000425biological_processpexophagy
A0005515molecular_functionprotein binding
A0005640cellular_componentnuclear outer membrane
A0005773cellular_componentvacuole
A0005774cellular_componentvacuolar membrane
A0005829cellular_componentcytosol
A0006629biological_processlipid metabolic process
A0006914biological_processautophagy
A0016020cellular_componentmembrane
A0016236biological_processmacroautophagy
A0031503biological_processprotein-containing complex localization
A0031965cellular_componentnuclear membrane
A0034497biological_processprotein localization to phagophore assembly site
A0034517biological_processribophagy
A0034727biological_processpiecemeal microautophagy of the nucleus
A0042144biological_processvacuole fusion, non-autophagic
A0042802molecular_functionidentical protein binding
A0043495molecular_functionprotein-membrane adaptor activity
A0045121cellular_componentmembrane raft
A0051656biological_processestablishment of organelle localization
A0071255biological_processCvt vesicle assembly
A0071561cellular_componentnucleus-vacuole junction
A0071562biological_processnucleus-vacuole junction assembly
A0071563cellular_componentMyo2p-Vac17p-Vac8p transport complex
A1903044biological_processprotein localization to membrane raft
C0000011biological_processvacuole inheritance
C0000045biological_processautophagosome assembly
C0000329cellular_componentfungal-type vacuole membrane
C0000407cellular_componentphagophore assembly site
C0000425biological_processpexophagy
C0005515molecular_functionprotein binding
C0005640cellular_componentnuclear outer membrane
C0005773cellular_componentvacuole
C0005774cellular_componentvacuolar membrane
C0005829cellular_componentcytosol
C0006629biological_processlipid metabolic process
C0006914biological_processautophagy
C0016020cellular_componentmembrane
C0016236biological_processmacroautophagy
C0031503biological_processprotein-containing complex localization
C0031965cellular_componentnuclear membrane
C0034497biological_processprotein localization to phagophore assembly site
C0034517biological_processribophagy
C0034727biological_processpiecemeal microautophagy of the nucleus
C0042144biological_processvacuole fusion, non-autophagic
C0042802molecular_functionidentical protein binding
C0043495molecular_functionprotein-membrane adaptor activity
C0045121cellular_componentmembrane raft
C0051656biological_processestablishment of organelle localization
C0071255biological_processCvt vesicle assembly
C0071561cellular_componentnucleus-vacuole junction
C0071562biological_processnucleus-vacuole junction assembly
C0071563cellular_componentMyo2p-Vac17p-Vac8p transport complex
C1903044biological_processprotein localization to membrane raft
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Phosphoserine; by PKA => ECO:0000269|PubMed:19805182
ChainResidueDetails
BSER581
DSER581

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine; by TORC1 => ECO:0000269|PubMed:19995911
ChainResidueDetails
BSER646
DSER646

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine; by TORC1 => ECO:0000269|PubMed:19995911, ECO:0007744|PubMed:15665377, ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
ChainResidueDetails
BSER649
DSER649

site_idSWS_FT_FI4
Number of Residues6
DetailsLIPID: S-palmitoyl cysteine => ECO:0000305|PubMed:9490720
ChainResidueDetails
ACYS19
ACYS20
ACYS22
CCYS19
CCYS20
CCYS22

site_idSWS_FT_FI5
Number of Residues6
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
ChainResidueDetails
AILE92
AASP530
CILE92
CASP530

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PDB entries from 2024-11-06

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