6JUJ
Crystal structure of Formate dehydrogenase mutant V198I/C256I/P260S/E261P/S381N/S383F from Pseudomonas sp. 101in complex with non-natural cofactor Nicotinamide Cytosine Dinucleotide
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0008863 | molecular_function | formate dehydrogenase (NAD+) activity |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| A | 0032787 | biological_process | monocarboxylic acid metabolic process |
| A | 0042183 | biological_process | formate catabolic process |
| A | 0051287 | molecular_function | NAD binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0008863 | molecular_function | formate dehydrogenase (NAD+) activity |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| B | 0032787 | biological_process | monocarboxylic acid metabolic process |
| B | 0042183 | biological_process | formate catabolic process |
| B | 0051287 | molecular_function | NAD binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 24 |
| Details | binding site for residue A7R A 501 |
| Chain | Residue |
| A | PHE99 |
| A | ASN255 |
| A | ILE256 |
| A | PRO257 |
| A | HIS259 |
| A | THR283 |
| A | ALA284 |
| A | ASP309 |
| A | VAL310 |
| A | HIS333 |
| A | SER335 |
| A | ASN147 |
| A | GLY336 |
| A | HOH608 |
| A | HOH622 |
| A | HOH630 |
| A | HOH694 |
| A | VAL151 |
| A | ALA199 |
| A | GLY201 |
| A | ARG202 |
| A | ILE203 |
| A | ASP222 |
| A | ARG223 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | binding site for residue GOL A 502 |
| Chain | Residue |
| A | PRO326 |
| A | TYR327 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 503 |
| Chain | Residue |
| A | ARG86 |
| A | LEU298 |
| A | GLU299 |
| A | GLY301 |
| A | TYR327 |
| A | HOH738 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue GOL A 504 |
| Chain | Residue |
| A | GLY124 |
| A | SER125 |
| A | ASP126 |
| A | GLU142 |
| A | ASN381 |
| site_id | AC5 |
| Number of Residues | 23 |
| Details | binding site for residue A7R B 501 |
| Chain | Residue |
| B | PHE99 |
| B | ASN147 |
| B | VAL151 |
| B | ALA199 |
| B | GLY201 |
| B | ARG202 |
| B | ILE203 |
| B | ASP222 |
| B | ARG223 |
| B | ASN255 |
| B | ILE256 |
| B | PRO257 |
| B | HIS259 |
| B | THR283 |
| B | ALA284 |
| B | ASP309 |
| B | HIS333 |
| B | SER335 |
| B | GLY336 |
| B | HOH661 |
| B | HOH679 |
| B | HOH683 |
| B | HOH731 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue GOL B 502 |
| Chain | Residue |
| B | GLN131 |
| B | ARG360 |
| B | PRO361 |
| B | ARG363 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 503 |
| Chain | Residue |
| B | ARG22 |
| B | ASP23 |
| B | GLY48 |
| B | GLN49 |
| B | HOH613 |
| B | HOH616 |
Functional Information from PROSITE/UniProt
| site_id | PS00065 |
| Number of Residues | 28 |
| Details | D_2_HYDROXYACID_DH_1 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. VGTIAaGRIGlavlrrlapfdvh.LHyTD |
| Chain | Residue | Details |
| A | VAL195-ASP222 |
| site_id | PS00670 |
| Number of Residues | 23 |
| Details | D_2_HYDROXYACID_DH_2 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. MYpvCDVVtLNiPlhspTehMiN |
| Chain | Residue | Details |
| A | MET245-ASN267 |
| site_id | PS00671 |
| Number of Residues | 17 |
| Details | D_2_HYDROXYACID_DH_3 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. FKrGaYIVNtARGkLCD |
| Chain | Residue | Details |
| A | PHE274-ASP290 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_03210","evidenceCode":"ECO:0000255"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"journal article","publicationDate":"2006","firstPage":"627","lastPage":"631","volume":"51","journal":"Crystallogr. Rep.","title":"Crystal structure of the complex of NAD-dependent formate dehydrogenase from methylotrophic bacterium Pseudomonas sp.101 with formate.","authors":["Filippova E.V.","Polyakov K.M.","Tikhonova T.V.","Stekhanova T.N.","Boiko K.M.","Sadihov I.G.","Tishkov V.I.","Labrou N.","Popov V.O."],"citationCrossReferences":[{"database":"DOI","id":"10.1134/S1063774506040146"}]}}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 25 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_03210","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"8114093","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | Site: {"description":"Important for catalytic activity","evidences":[{"source":"HAMAP-Rule","id":"MF_03210","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"8114093","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | MCSA1 |
| Number of Residues | 4 |
| Details | M-CSA 902 |
| Chain | Residue | Details |
| A | ASN147 | electrostatic stabiliser |
| A | ARG285 | electrostatic stabiliser |
| A | GLN314 | modifies pKa |
| A | HIS333 | enhance reactivity |
| site_id | MCSA2 |
| Number of Residues | 4 |
| Details | M-CSA 902 |
| Chain | Residue | Details |
| B | ASN147 | electrostatic stabiliser |
| B | ARG285 | electrostatic stabiliser |
| B | GLN314 | modifies pKa |
| B | HIS333 | enhance reactivity |
