Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6JI0

Structure of RyR2 (F/A/C/Ca2+ dataset)

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
A0005216molecular_functionmonoatomic ion channel activity
A0005219molecular_functionryanodine-sensitive calcium-release channel activity
A0005262molecular_functioncalcium channel activity
A0005509molecular_functioncalcium ion binding
A0006811biological_processmonoatomic ion transport
A0006816biological_processcalcium ion transport
A0006874biological_processintracellular calcium ion homeostasis
A0016020cellular_componentmembrane
A0055085biological_processtransmembrane transport
A0070588biological_processcalcium ion transmembrane transport
B0000413biological_processprotein peptidyl-prolyl isomerization
B0002027biological_processregulation of heart rate
B0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
B0005102molecular_functionsignaling receptor binding
B0005219molecular_functionryanodine-sensitive calcium-release channel activity
B0005515molecular_functionprotein binding
B0005528molecular_functionFK506 binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006458biological_process'de novo' protein folding
B0006939biological_processsmooth muscle contraction
B0007204biological_processpositive regulation of cytosolic calcium ion concentration
B0009749biological_processresponse to glucose
B0010033biological_processresponse to organic substance
B0010459biological_processnegative regulation of heart rate
B0010880biological_processregulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
B0010881biological_processregulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
B0016020cellular_componentmembrane
B0016529cellular_componentsarcoplasmic reticulum
B0016853molecular_functionisomerase activity
B0019227biological_processneuronal action potential propagation
B0019855molecular_functioncalcium channel inhibitor activity
B0022417biological_processprotein maturation by protein folding
B0030018cellular_componentZ disc
B0030073biological_processinsulin secretion
B0030551molecular_functioncyclic nucleotide binding
B0032515biological_processnegative regulation of phosphoprotein phosphatase activity
B0033017cellular_componentsarcoplasmic reticulum membrane
B0033197biological_processresponse to vitamin E
B0034704cellular_componentcalcium channel complex
B0035584biological_processcalcium-mediated signaling using intracellular calcium source
B0035773biological_processinsulin secretion involved in cellular response to glucose stimulus
B0042026biological_processprotein refolding
B0042098biological_processT cell proliferation
B0042542biological_processresponse to hydrogen peroxide
B0044325molecular_functiontransmembrane transporter binding
B0048680biological_processpositive regulation of axon regeneration
B0051209biological_processrelease of sequestered calcium ion into cytosol
B0051280biological_processnegative regulation of release of sequestered calcium ion into cytosol
B0051284biological_processpositive regulation of sequestering of calcium ion
B0051480biological_processregulation of cytosolic calcium ion concentration
B0051775biological_processresponse to redox state
B0060314biological_processregulation of ryanodine-sensitive calcium-release channel activity
B0060315biological_processnegative regulation of ryanodine-sensitive calcium-release channel activity
B0061179biological_processnegative regulation of insulin secretion involved in cellular response to glucose stimulus
B0086064biological_processcell communication by electrical coupling involved in cardiac conduction
C0005216molecular_functionmonoatomic ion channel activity
C0005219molecular_functionryanodine-sensitive calcium-release channel activity
C0005262molecular_functioncalcium channel activity
C0005509molecular_functioncalcium ion binding
C0006811biological_processmonoatomic ion transport
C0006816biological_processcalcium ion transport
C0006874biological_processintracellular calcium ion homeostasis
C0016020cellular_componentmembrane
C0055085biological_processtransmembrane transport
C0070588biological_processcalcium ion transmembrane transport
D0000413biological_processprotein peptidyl-prolyl isomerization
D0002027biological_processregulation of heart rate
D0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
D0005102molecular_functionsignaling receptor binding
D0005219molecular_functionryanodine-sensitive calcium-release channel activity
D0005515molecular_functionprotein binding
D0005528molecular_functionFK506 binding
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0006458biological_process'de novo' protein folding
D0006939biological_processsmooth muscle contraction
D0007204biological_processpositive regulation of cytosolic calcium ion concentration
D0009749biological_processresponse to glucose
D0010033biological_processresponse to organic substance
D0010459biological_processnegative regulation of heart rate
D0010880biological_processregulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
D0010881biological_processregulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
D0016020cellular_componentmembrane
D0016529cellular_componentsarcoplasmic reticulum
D0016853molecular_functionisomerase activity
D0019227biological_processneuronal action potential propagation
D0019855molecular_functioncalcium channel inhibitor activity
D0022417biological_processprotein maturation by protein folding
D0030018cellular_componentZ disc
D0030073biological_processinsulin secretion
D0030551molecular_functioncyclic nucleotide binding
D0032515biological_processnegative regulation of phosphoprotein phosphatase activity
D0033017cellular_componentsarcoplasmic reticulum membrane
D0033197biological_processresponse to vitamin E
D0034704cellular_componentcalcium channel complex
D0035584biological_processcalcium-mediated signaling using intracellular calcium source
D0035773biological_processinsulin secretion involved in cellular response to glucose stimulus
D0042026biological_processprotein refolding
D0042098biological_processT cell proliferation
D0042542biological_processresponse to hydrogen peroxide
D0044325molecular_functiontransmembrane transporter binding
D0048680biological_processpositive regulation of axon regeneration
D0051209biological_processrelease of sequestered calcium ion into cytosol
D0051280biological_processnegative regulation of release of sequestered calcium ion into cytosol
D0051284biological_processpositive regulation of sequestering of calcium ion
D0051480biological_processregulation of cytosolic calcium ion concentration
D0051775biological_processresponse to redox state
D0060314biological_processregulation of ryanodine-sensitive calcium-release channel activity
D0060315biological_processnegative regulation of ryanodine-sensitive calcium-release channel activity
D0061179biological_processnegative regulation of insulin secretion involved in cellular response to glucose stimulus
D0086064biological_processcell communication by electrical coupling involved in cardiac conduction
E0005216molecular_functionmonoatomic ion channel activity
E0005219molecular_functionryanodine-sensitive calcium-release channel activity
E0005262molecular_functioncalcium channel activity
E0005509molecular_functioncalcium ion binding
E0006811biological_processmonoatomic ion transport
E0006816biological_processcalcium ion transport
E0006874biological_processintracellular calcium ion homeostasis
E0016020cellular_componentmembrane
E0055085biological_processtransmembrane transport
E0070588biological_processcalcium ion transmembrane transport
F0000413biological_processprotein peptidyl-prolyl isomerization
F0002027biological_processregulation of heart rate
F0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
F0005102molecular_functionsignaling receptor binding
F0005219molecular_functionryanodine-sensitive calcium-release channel activity
F0005515molecular_functionprotein binding
F0005528molecular_functionFK506 binding
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0006458biological_process'de novo' protein folding
F0006939biological_processsmooth muscle contraction
F0007204biological_processpositive regulation of cytosolic calcium ion concentration
F0009749biological_processresponse to glucose
F0010033biological_processresponse to organic substance
F0010459biological_processnegative regulation of heart rate
F0010880biological_processregulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
F0010881biological_processregulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
F0016020cellular_componentmembrane
F0016529cellular_componentsarcoplasmic reticulum
F0016853molecular_functionisomerase activity
F0019227biological_processneuronal action potential propagation
F0019855molecular_functioncalcium channel inhibitor activity
F0022417biological_processprotein maturation by protein folding
F0030018cellular_componentZ disc
F0030073biological_processinsulin secretion
F0030551molecular_functioncyclic nucleotide binding
F0032515biological_processnegative regulation of phosphoprotein phosphatase activity
F0033017cellular_componentsarcoplasmic reticulum membrane
F0033197biological_processresponse to vitamin E
F0034704cellular_componentcalcium channel complex
F0035584biological_processcalcium-mediated signaling using intracellular calcium source
F0035773biological_processinsulin secretion involved in cellular response to glucose stimulus
F0042026biological_processprotein refolding
F0042098biological_processT cell proliferation
F0042542biological_processresponse to hydrogen peroxide
F0044325molecular_functiontransmembrane transporter binding
F0048680biological_processpositive regulation of axon regeneration
F0051209biological_processrelease of sequestered calcium ion into cytosol
F0051280biological_processnegative regulation of release of sequestered calcium ion into cytosol
F0051284biological_processpositive regulation of sequestering of calcium ion
F0051480biological_processregulation of cytosolic calcium ion concentration
F0051775biological_processresponse to redox state
F0060314biological_processregulation of ryanodine-sensitive calcium-release channel activity
F0060315biological_processnegative regulation of ryanodine-sensitive calcium-release channel activity
F0061179biological_processnegative regulation of insulin secretion involved in cellular response to glucose stimulus
F0086064biological_processcell communication by electrical coupling involved in cardiac conduction
G0005216molecular_functionmonoatomic ion channel activity
G0005219molecular_functionryanodine-sensitive calcium-release channel activity
G0005262molecular_functioncalcium channel activity
G0005509molecular_functioncalcium ion binding
G0006811biological_processmonoatomic ion transport
G0006816biological_processcalcium ion transport
G0006874biological_processintracellular calcium ion homeostasis
G0016020cellular_componentmembrane
G0055085biological_processtransmembrane transport
G0070588biological_processcalcium ion transmembrane transport
H0000413biological_processprotein peptidyl-prolyl isomerization
H0002027biological_processregulation of heart rate
H0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
H0005102molecular_functionsignaling receptor binding
H0005219molecular_functionryanodine-sensitive calcium-release channel activity
H0005515molecular_functionprotein binding
H0005528molecular_functionFK506 binding
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0006458biological_process'de novo' protein folding
H0006939biological_processsmooth muscle contraction
H0007204biological_processpositive regulation of cytosolic calcium ion concentration
H0009749biological_processresponse to glucose
H0010033biological_processresponse to organic substance
H0010459biological_processnegative regulation of heart rate
H0010880biological_processregulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
H0010881biological_processregulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
H0016020cellular_componentmembrane
H0016529cellular_componentsarcoplasmic reticulum
H0016853molecular_functionisomerase activity
H0019227biological_processneuronal action potential propagation
H0019855molecular_functioncalcium channel inhibitor activity
H0022417biological_processprotein maturation by protein folding
H0030018cellular_componentZ disc
H0030073biological_processinsulin secretion
H0030551molecular_functioncyclic nucleotide binding
H0032515biological_processnegative regulation of phosphoprotein phosphatase activity
H0033017cellular_componentsarcoplasmic reticulum membrane
H0033197biological_processresponse to vitamin E
H0034704cellular_componentcalcium channel complex
H0035584biological_processcalcium-mediated signaling using intracellular calcium source
H0035773biological_processinsulin secretion involved in cellular response to glucose stimulus
H0042026biological_processprotein refolding
H0042098biological_processT cell proliferation
H0042542biological_processresponse to hydrogen peroxide
H0044325molecular_functiontransmembrane transporter binding
H0048680biological_processpositive regulation of axon regeneration
H0051209biological_processrelease of sequestered calcium ion into cytosol
H0051280biological_processnegative regulation of release of sequestered calcium ion into cytosol
H0051284biological_processpositive regulation of sequestering of calcium ion
H0051480biological_processregulation of cytosolic calcium ion concentration
H0051775biological_processresponse to redox state
H0060314biological_processregulation of ryanodine-sensitive calcium-release channel activity
H0060315biological_processnegative regulation of ryanodine-sensitive calcium-release channel activity
H0061179biological_processnegative regulation of insulin secretion involved in cellular response to glucose stimulus
H0086064biological_processcell communication by electrical coupling involved in cardiac conduction
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 5100
ChainResidue
ACYS4889
AILE4891
ACYS4892
AHIS4909
AHIS4914

site_idAC2
Number of Residues11
Detailsbinding site for residue ATP A 5101
ChainResidue
AGLU4886
ACYS4889
APHE4890
AILE4891
APHE4906
ATHR4910
ALEU4916
ALYS4167
ALYS4170
AARG4171
AMET4885

site_idAC3
Number of Residues3
Detailsbinding site for residue CA A 5102
ChainResidue
AGLU3849
AGLU3923
ATHR4932

site_idAC4
Number of Residues5
Detailsbinding site for residue CFF A 5103
ChainResidue
APHE3715
ATRP4646
AILE4927
ATRP4942
ATYR4945

site_idAC5
Number of Residues5
Detailsbinding site for residue ZN C 5100
ChainResidue
CCYS4889
CILE4891
CCYS4892
CHIS4909
CHIS4914

site_idAC6
Number of Residues11
Detailsbinding site for residue ATP C 5101
ChainResidue
CLYS4167
CLYS4170
CARG4171
CMET4885
CGLU4886
CCYS4889
CPHE4890
CILE4891
CPHE4906
CTHR4910
CLEU4916

site_idAC7
Number of Residues3
Detailsbinding site for residue CA C 5102
ChainResidue
CGLU3849
CGLU3923
CTHR4932

site_idAC8
Number of Residues5
Detailsbinding site for residue CFF C 5103
ChainResidue
CPHE3715
CTRP4646
CILE4927
CTRP4942
CTYR4945

site_idAC9
Number of Residues5
Detailsbinding site for residue ZN E 5100
ChainResidue
ECYS4889
EILE4891
ECYS4892
EHIS4909
EHIS4914

site_idAD1
Number of Residues11
Detailsbinding site for residue ATP E 5101
ChainResidue
ELYS4167
ELYS4170
EARG4171
EMET4885
EGLU4886
ECYS4889
EPHE4890
EILE4891
EPHE4906
ETHR4910
ELEU4916

site_idAD2
Number of Residues3
Detailsbinding site for residue CA E 5102
ChainResidue
EGLU3849
EGLU3923
ETHR4932

site_idAD3
Number of Residues5
Detailsbinding site for residue CFF E 5103
ChainResidue
EPHE3715
ETRP4646
EILE4927
ETRP4942
ETYR4945

site_idAD4
Number of Residues5
Detailsbinding site for residue ZN G 5100
ChainResidue
GCYS4889
GILE4891
GCYS4892
GHIS4909
GHIS4914

site_idAD5
Number of Residues11
Detailsbinding site for residue ATP G 5101
ChainResidue
GLYS4167
GLYS4170
GARG4171
GMET4885
GGLU4886
GCYS4889
GPHE4890
GILE4891
GPHE4906
GTHR4910
GLEU4916

site_idAD6
Number of Residues3
Detailsbinding site for residue CA G 5102
ChainResidue
GGLU3849
GGLU3923
GTHR4932

site_idAD7
Number of Residues5
Detailsbinding site for residue CFF G 5103
ChainResidue
GPHE3715
GTRP4646
GILE4927
GTRP4942
GTYR4945

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon