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6J4V

Structural basis of tubulin detyrosination by vasohibins-SVBP enzyme complex and functional implications

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0045765biological_processregulation of angiogenesis
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005737cellular_componentcytoplasm
B0005856cellular_componentcytoskeleton
B0006508biological_processproteolysis
B0008017molecular_functionmicrotubule binding
B0009306biological_processprotein secretion
B0010596biological_processnegative regulation of endothelial cell migration
B0016504molecular_functionpeptidase activator activity
B0031397biological_processnegative regulation of protein ubiquitination
B0045177cellular_componentapical part of cell
B0061564biological_processaxon development
B1905048biological_processregulation of metallopeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue PO4 A 301
ChainResidue
AARG102
ASER104
AHOH432

site_idAC2
Number of Residues4
Detailsbinding site for residue PO4 A 302
ChainResidue
ALYS183
AHIS192
ALYS245
ALYS247

site_idAC3
Number of Residues5
Detailsbinding site for residue GOL A 303
ChainResidue
AASN86
AHOH405
BGLU38
ATRP63
AARG85

site_idAC4
Number of Residues8
Detailsbinding site for residue GOL A 304
ChainResidue
ALYS119
ASER210
AARG211
AARG212
AALA213
AMET216
AHOH470
AHOH541

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL A 305
ChainResidue
APRO93
ASER94
APRO96
ATHR120
AHOH475
BTYR40

site_idAC6
Number of Residues3
Detailsbinding site for residue GOL A 306
ChainResidue
APRO99
AASN100
AHOH426

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"evidences":[{"source":"PubMed","id":"29146869","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26794318","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"evidences":[{"source":"PubMed","id":"26794318","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsSite: {"description":"Involved in polymerization"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"3'-nitrotyrosine","evidences":[{"source":"PubMed","id":"10339593","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

247947

PDB entries from 2026-01-21

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