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6IWB

Crystal structure of a computationally designed protein (LD3) in complex with BCL-2

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0006869biological_processlipid transport
A0008289molecular_functionlipid binding
A0042157biological_processlipoprotein metabolic process
B0042981biological_processregulation of apoptotic process
B0043066biological_processnegative regulation of apoptotic process
C0005576cellular_componentextracellular region
C0006869biological_processlipid transport
C0008289molecular_functionlipid binding
C0042157biological_processlipoprotein metabolic process
D0042981biological_processregulation of apoptotic process
D0043066biological_processnegative regulation of apoptotic process
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue SO4 A 201
ChainResidue
AARG101
AARG123
AHIS127
AHOH301
AHOH303
CARG101
CARG123
CHIS127

site_idAC2
Number of Residues3
Detailsbinding site for residue SO4 A 202
ChainResidue
AARG99
CARG12
AARG48

Functional Information from PROSITE/UniProt
site_idPS01080
Number of Residues19
DetailsBH1 Apoptosis regulator, Bcl-2 family BH1 motif signature. LFrDGv.NWGRIVAFFeFGG
ChainResidueDetails
BLEU96-GLY114

site_idPS01258
Number of Residues12
DetailsBH2 Apoptosis regulator, Bcl-2 family BH2 motif signature. WIqdnGGWDaFV
ChainResidueDetails
BTRP147-VAL158

site_idPS01259
Number of Residues15
DetailsBH3 Apoptosis regulator, Bcl-2 family BH3 motif signature. VhltLRqAGDDFSRR
ChainResidueDetails
BVAL52-ARG66

site_idPS01260
Number of Residues21
DetailsBH4_1 Apoptosis regulator, Bcl-2 family BH4 motif signature. DNREIVmKYIHYKLSQRGYeW
ChainResidueDetails
BASP10-TRP30

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Cleavage; by caspase-3
ChainResidueDetails
BASP34
DASP34

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Methionine sulfoxide => ECO:0000250|UniProtKB:P08226
ChainResidueDetails
AMET112
CMET112

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine; by FAM20C => ECO:0000269|PubMed:26091039, ECO:0007744|PubMed:24275569
ChainResidueDetails
ASER116
CSER116

site_idSWS_FT_FI4
Number of Residues2
DetailsCARBOHYD: N-linked (Glc) (glycation) lysine => ECO:0000269|PubMed:10452964
ChainResidueDetails
ALYS62
CLYS62

226707

PDB entries from 2024-10-30

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