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6ITO

Crystal structure of pyruvate kinase (PYK) from Mycobacterium tuberculosis in complex with Oxalate, AMP and inhibitor Ribose 5-Phosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000287molecular_functionmagnesium ion binding
A0003824molecular_functioncatalytic activity
A0004743molecular_functionpyruvate kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0006096biological_processglycolytic process
A0016301molecular_functionkinase activity
A0016740molecular_functiontransferase activity
A0030955molecular_functionpotassium ion binding
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0000287molecular_functionmagnesium ion binding
B0003824molecular_functioncatalytic activity
B0004743molecular_functionpyruvate kinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0006096biological_processglycolytic process
B0016301molecular_functionkinase activity
B0016740molecular_functiontransferase activity
B0030955molecular_functionpotassium ion binding
B0046872molecular_functionmetal ion binding
C0000166molecular_functionnucleotide binding
C0000287molecular_functionmagnesium ion binding
C0003824molecular_functioncatalytic activity
C0004743molecular_functionpyruvate kinase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0005886cellular_componentplasma membrane
C0006096biological_processglycolytic process
C0016301molecular_functionkinase activity
C0016740molecular_functiontransferase activity
C0030955molecular_functionpotassium ion binding
C0046872molecular_functionmetal ion binding
D0000166molecular_functionnucleotide binding
D0000287molecular_functionmagnesium ion binding
D0003824molecular_functioncatalytic activity
D0004743molecular_functionpyruvate kinase activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0005886cellular_componentplasma membrane
D0006096biological_processglycolytic process
D0016301molecular_functionkinase activity
D0016740molecular_functiontransferase activity
D0030955molecular_functionpotassium ion binding
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG A 501
ChainResidue
AGLU220
AASP244
AOXL502
AHOH602
AHOH607

site_idAC2
Number of Residues11
Detailsbinding site for residue OXL A 502
ChainResidue
AGLY243
AASP244
ATHR276
AMG501
AHOH602
AHOH604
AHOH607
ALYS218
AGLU220
AALA241
AARG242

site_idAC3
Number of Residues9
Detailsbinding site for residue R5P A 503
ChainResidue
AGLU267
AASN268
AHIS345
APRO347
AARG348
ATHR349
AGLY352
AARG382
AARG385

site_idAC4
Number of Residues20
Detailsbinding site for residue AMP A 504
ChainResidue
AARG351
APHE373
ATHR374
AGLN375
ASER376
ATHR379
AALA397
AVAL416
APRO417
ALYS418
AMET419
AMET425
AGLY450
APRO453
AGLY454
ATHR455
AVAL456
AGLY457
ASER458
ATHR459

site_idAC5
Number of Residues6
Detailsbinding site for residue MG B 501
ChainResidue
BLYS218
BGLU220
BASP244
BOXL502
BHOH603
BHOH633

site_idAC6
Number of Residues9
Detailsbinding site for residue OXL B 502
ChainResidue
BLYS218
BGLU220
BALA241
BARG242
BGLY243
BASP244
BTHR276
BMG501
BHOH633

site_idAC7
Number of Residues9
Detailsbinding site for residue R5P B 503
ChainResidue
BGLU267
BASN268
BHIS345
BPRO347
BARG348
BTHR349
BGLY352
BARG382
BARG385

site_idAC8
Number of Residues19
Detailsbinding site for residue AMP B 504
ChainResidue
BARG351
BPHE373
BTHR374
BGLN375
BSER376
BTHR379
BALA397
BVAL416
BPRO417
BLYS418
BMET419
BMET425
BGLY450
BPRO453
BGLY454
BTHR455
BGLY457
BSER458
BTHR459

site_idAC9
Number of Residues5
Detailsbinding site for residue MG C 501
ChainResidue
CGLU220
CASP244
COXL502
CHOH607
CHOH612

site_idAD1
Number of Residues8
Detailsbinding site for residue OXL C 502
ChainResidue
CTHR276
CMG501
CLYS218
CGLU220
CALA241
CARG242
CGLY243
CASP244

site_idAD2
Number of Residues9
Detailsbinding site for residue R5P C 503
ChainResidue
CGLU267
CASN268
CHIS345
CPRO347
CARG348
CTHR349
CGLY352
CARG382
CARG385

site_idAD3
Number of Residues20
Detailsbinding site for residue AMP C 504
ChainResidue
CARG351
CPHE373
CTHR374
CGLN375
CSER376
CTHR379
CALA397
CVAL416
CPRO417
CLYS418
CMET419
CMET425
CGLY450
CPRO453
CGLY454
CTHR455
CVAL456
CGLY457
CSER458
CTHR459

site_idAD4
Number of Residues6
Detailsbinding site for residue MG D 501
ChainResidue
DLYS218
DGLU220
DASP244
DOXL502
DHOH602
DHOH607

site_idAD5
Number of Residues9
Detailsbinding site for residue OXL D 502
ChainResidue
DLYS218
DGLU220
DALA241
DARG242
DGLY243
DASP244
DTHR276
DMG501
DHOH602

site_idAD6
Number of Residues10
Detailsbinding site for residue R5P D 503
ChainResidue
DGLU267
DASN268
DHIS345
DPRO347
DARG348
DTHR349
DGLY352
DARG382
DARG385
DHOH615

site_idAD7
Number of Residues20
Detailsbinding site for residue AMP D 504
ChainResidue
DARG351
DPHE373
DTHR374
DGLN375
DSER376
DTHR379
DPHE395
DALA397
DVAL416
DPRO417
DLYS418
DMET419
DMET425
DGLY450
DGLY454
DTHR455
DVAL456
DGLY457
DSER458
DTHR459

Functional Information from PROSITE/UniProt
site_idPS00110
Number of Residues13
DetailsPYRUVATE_KINASE Pyruvate kinase active site signature. VpVIAKLEKpEAI
ChainResidueDetails
AVAL213-ILE225

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues32
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues20
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P14618","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsSite: {"description":"Transition state stabilizer","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsModified residue: {"description":"Phosphoserine; by PknJ; in vitro","evidences":[{"source":"PubMed","id":"20520732","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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