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6IMJ

The crystal structure of Se-AsfvLIG:DNA complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0003909molecular_functionDNA ligase activity
A0003910molecular_functionDNA ligase (ATP) activity
A0005524molecular_functionATP binding
A0006260biological_processDNA replication
A0006281biological_processDNA repair
A0006310biological_processDNA recombination
A0016874molecular_functionligase activity
A0044423cellular_componentvirion component
A0046872molecular_functionmetal ion binding
A0051301biological_processcell division
B0003909molecular_functionDNA ligase activity
B0003910molecular_functionDNA ligase (ATP) activity
B0005524molecular_functionATP binding
B0006260biological_processDNA replication
B0006281biological_processDNA repair
B0006310biological_processDNA recombination
B0016874molecular_functionligase activity
B0044423cellular_componentvirion component
B0046872molecular_functionmetal ion binding
B0051301biological_processcell division
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue ATP A 501
ChainResidue
ALEU128
APHE232
AILE294
AARG296
ALYS316
ACD503
ACD504
AHOH630
AVAL129
AGLN149
AARG150
ALYS151
AARG152
AARG156
AARG172
AGLU203

site_idAC2
Number of Residues3
Detailsbinding site for residue CD A 502
ChainResidue
ALYS380
AHIS381
AILE419

site_idAC3
Number of Residues3
Detailsbinding site for residue CD A 503
ChainResidue
AARG172
AHIS310
AATP501

site_idAC4
Number of Residues3
Detailsbinding site for residue CD A 504
ChainResidue
ALYS151
AGLU291
AATP501

site_idAC5
Number of Residues3
Detailsbinding site for residue CL A 505
ChainResidue
AARG150
AARG152
AGLU268

site_idAC6
Number of Residues17
Detailsbinding site for residue ATP B 501
ChainResidue
BLEU128
BVAL129
BGLN149
BARG150
BLYS151
BARG152
BARG156
BARG172
BGLU203
BPHE232
BILE294
BARG296
BLYS316
BCD503
BCD504
BHOH602
BHOH621

site_idAC7
Number of Residues3
Detailsbinding site for residue CD B 502
ChainResidue
BLEU377
BHIS381
BILE419

site_idAC8
Number of Residues2
Detailsbinding site for residue CD B 503
ChainResidue
BHIS310
BATP501

site_idAC9
Number of Residues1
Detailsbinding site for residue CD B 504
ChainResidue
BATP501

Functional Information from PROSITE/UniProt
site_idPS00333
Number of Residues28
DetailsDNA_LIGASE_A2 ATP-dependent DNA ligase signature 2. EGAIVRnangp...YEpgynnyHsahlaKLK
ChainResidueDetails
AGLU291-LYS318

site_idPS00697
Number of Residues9
DetailsDNA_LIGASE_A1 ATP-dependent DNA ligase AMP-binding site. QRKRNGVRA
ChainResidueDetails
AGLN149-ALA157

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: N6-AMP-lysine intermediate => ECO:0000255|PROSITE-ProRule:PRU10135
ChainResidueDetails
ALYS151
BLYS151

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:30674878
ChainResidueDetails
AGLN149
BPHE232
BILE294
BLYS316
ALYS151
AGLU203
APHE232
AILE294
ALYS316
BGLN149
BLYS151
BGLU203

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLU291
BGLU291

site_idSWS_FT_FI4
Number of Residues8
DetailsSITE: Important for the catalytic efficiency => ECO:0000269|PubMed:30674878
ChainResidueDetails
AASN153
ALEU211
ALEU402
AGLN403
BASN153
BLEU211
BLEU402
BGLN403

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PDB entries from 2024-09-04

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