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6HY3

Three-dimensional structure of AgaC from Zobellia galactanivorans

Functional Information from GO Data
ChainGOidnamespacecontents
A0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
A0005975biological_processcarbohydrate metabolic process
A0033916molecular_functionbeta-agarase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG A 401
ChainResidue
AGLU95
AGLY128
AASP318
AHOH520
AHOH630

site_idAC2
Number of Residues10
Detailsbinding site for residue GOL A 402
ChainResidue
AGLU188
AASP190
AGLU193
ATRP291
AHOH563
AHOH609
AHIS63
ATYR112
ATHR175
ATRP177

site_idAC3
Number of Residues9
Detailsbinding site for residue GOL A 403
ChainResidue
AGLU95
AGLN209
AASN228
APHE229
AASP230
AGLU233
AHOH509
AHOH577
AHOH580

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 404
ChainResidue
AHIS65
APHE72
AARG224
AALA237
APRO239
AHOH562
AHOH625

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 405
ChainResidue
AMET150
AASN179
AASN285
AHOH501
AHOH541

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues258
DetailsDomain: {"description":"GH16","evidences":[{"source":"PROSITE-ProRule","id":"PRU01098","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"UniProtKB","id":"G0L322","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"UniProtKB","id":"G0L322","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"D7GXG0","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues13
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"G0L322","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246333

PDB entries from 2025-12-17

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