Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6HX2

The structure of Dps from Listeria innocua soaked with Cobalt

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005737	cellular_component	cytoplasm
A	0006879	biological_process	intracellular iron ion homeostasis
A	0008199	molecular_function	ferric iron binding
A	0016491	molecular_function	oxidoreductase activity
A	0016722	molecular_function	oxidoreductase activity, acting on metal ions
A	0046872	molecular_function	metal ion binding
B	0005737	cellular_component	cytoplasm
B	0006879	biological_process	intracellular iron ion homeostasis
B	0008199	molecular_function	ferric iron binding
B	0016491	molecular_function	oxidoreductase activity
B	0016722	molecular_function	oxidoreductase activity, acting on metal ions
B	0046872	molecular_function	metal ion binding
C	0005737	cellular_component	cytoplasm
C	0006879	biological_process	intracellular iron ion homeostasis
C	0008199	molecular_function	ferric iron binding
C	0016491	molecular_function	oxidoreductase activity
C	0016722	molecular_function	oxidoreductase activity, acting on metal ions
C	0046872	molecular_function	metal ion binding
D	0005737	cellular_component	cytoplasm
D	0006879	biological_process	intracellular iron ion homeostasis
D	0008199	molecular_function	ferric iron binding
D	0016491	molecular_function	oxidoreductase activity
D	0016722	molecular_function	oxidoreductase activity, acting on metal ions
D	0046872	molecular_function	metal ion binding
E	0005737	cellular_component	cytoplasm
E	0006879	biological_process	intracellular iron ion homeostasis
E	0008199	molecular_function	ferric iron binding
E	0016491	molecular_function	oxidoreductase activity
E	0016722	molecular_function	oxidoreductase activity, acting on metal ions
E	0046872	molecular_function	metal ion binding
F	0005737	cellular_component	cytoplasm
F	0006879	biological_process	intracellular iron ion homeostasis
F	0008199	molecular_function	ferric iron binding
F	0016491	molecular_function	oxidoreductase activity
F	0016722	molecular_function	oxidoreductase activity, acting on metal ions
F	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	binding site for residue CO A 201

Chain	Residue
A	ASP59
A	GLU63
A	HOH381
D	HIS32
D	HOH322

site_id	AC2
Number of Residues	6
Details	binding site for residue CO A 202

Chain	Residue
A	HOH439
A	HOH446
A	HIS16
A	CO208
A	HOH337
A	HOH428

site_id	AC3
Number of Residues	6
Details	binding site for residue CO A 203

Chain	Residue
A	HOH355
A	HOH456
E	HOH366
E	HOH451
F	HOH382
F	HOH461

site_id	AC4
Number of Residues	6
Details	binding site for residue CO A 204

Chain	Residue
A	HIS38
A	CO210
A	HOH469
E	HOH308
E	HOH390
E	HOH450

site_id	AC5
Number of Residues	3
Details	binding site for residue CO A 205

Chain	Residue
A	ASP97
D	LYS3
F	HIS38

site_id	AC6
Number of Residues	6
Details	binding site for residue CO A 206

Chain	Residue
A	GLU56
A	HOH303
A	HOH315
A	HOH436
A	HOH462
A	HOH471

site_id	AC7
Number of Residues	4
Details	binding site for residue CO A 207

Chain	Residue
A	HOH435
A	HOH449
E	HOH449
E	HOH477

site_id	AC8
Number of Residues	7
Details	binding site for residue CO A 208

Chain	Residue
A	GLU12
A	CO202
A	HOH337
A	HOH428
A	HOH439
A	HOH446
A	HOH466

site_id	AC9
Number of Residues	5
Details	binding site for residue CO A 209

Chain	Residue
A	ASP131
A	HOH389
A	HOH429
B	CO208
F	CO203

site_id	AD1
Number of Residues	4
Details	binding site for residue CO A 210

Chain	Residue
A	HIS38
A	CO204
E	ASP97
E	HOH308

site_id	AD2
Number of Residues	5
Details	binding site for residue CO B 201

Chain	Residue
B	ASP59
B	GLU63
B	HOH357
E	HIS32
E	HOH356

site_id	AD3
Number of Residues	6
Details	binding site for residue CO B 202

Chain	Residue
B	MET2
B	HIS16
B	HOH301
B	HOH325
B	HOH422
B	HOH448

site_id	AD4
Number of Residues	6
Details	binding site for residue CO B 203

Chain	Residue
B	ASP97
B	HOH308
D	HIS38
D	HOH341
D	HOH360
F	HOH354

site_id	AD5
Number of Residues	5
Details	binding site for residue CO B 204

Chain	Residue
B	HIS38
B	HOH449
C	ASP97
C	HOH301
C	HOH404

site_id	AD6
Number of Residues	6
Details	binding site for residue CO B 205

Chain	Residue
A	HOH309
A	HOH475
A	HOH488
B	HOH375
B	HOH388
F	HOH463

site_id	AD7
Number of Residues	7
Details	binding site for residue CO B 206

Chain	Residue
B	THR42
B	HOH370
C	ASN39
C	THR42
C	HOH319
D	THR42
D	HOH321

site_id	AD8
Number of Residues	7
Details	binding site for residue CO B 207

Chain	Residue
B	GLU56
B	ASP59
B	HOH310
B	HOH314
B	HOH318
B	HOH414
B	HOH467

site_id	AD9
Number of Residues	7
Details	binding site for residue CO B 208

Chain	Residue
F	ASP131
F	CO203
A	ASP131
A	CO209
B	ASP131
B	HOH367
B	HOH377

site_id	AE1
Number of Residues	5
Details	binding site for residue CO C 201

Chain	Residue
C	HIS32
C	ASP59
C	GLU63
C	HOH313
C	HOH333

site_id	AE2
Number of Residues	7
Details	binding site for residue CO C 202

Chain	Residue
C	HIS38
D	ASP97
D	HOH305
D	HOH333
D	HOH423
D	HOH438
F	HOH460

site_id	AE3
Number of Residues	6
Details	binding site for residue CO C 203

Chain	Residue
B	HOH391
B	HOH451
C	HOH388
C	HOH452
D	HOH429
D	HOH467

site_id	AE4
Number of Residues	7
Details	binding site for residue CO C 204

Chain	Residue
C	HIS16
C	CO207
C	HOH322
C	HOH410
C	HOH422
C	HOH424
C	HOH450

site_id	AE5
Number of Residues	6
Details	binding site for residue CO C 205

Chain	Residue
C	HOH344
C	HOH431
D	HOH401
D	HOH460
E	HOH312
E	HOH453

site_id	AE6
Number of Residues	6
Details	binding site for residue CO C 206

Chain	Residue
C	GLU56
C	ASP59
C	HOH307
C	HOH338
C	HOH418
D	HOH491

site_id	AE7
Number of Residues	5
Details	binding site for residue CO C 207

Chain	Residue
C	CO204
C	HOH322
C	HOH410
C	HOH422
C	HOH450

site_id	AE8
Number of Residues	7
Details	binding site for residue CO C 208

Chain	Residue
C	ASP131
C	CO209
C	HOH392
D	ASP131
D	HOH387
E	ASP131
E	CO207

site_id	AE9
Number of Residues	4
Details	binding site for residue CO C 209

Chain	Residue
C	CO208
D	ASP131
D	HOH353
E	CO207

site_id	AF1
Number of Residues	5
Details	binding site for residue CO D 201

Chain	Residue
A	HIS32
A	HOH331
D	ASP59
D	GLU63
D	HOH343

site_id	AF2
Number of Residues	5
Details	binding site for residue CO D 202

Chain	Residue
D	MET2
D	HIS16
D	HOH342
D	HOH414
D	HOH448

site_id	AF3
Number of Residues	7
Details	binding site for residue CO D 203

Chain	Residue
C	HOH355
C	HOH469
D	GLU119
D	ASP122
D	HOH338
D	HOH344
D	HOH481

site_id	AF4
Number of Residues	5
Details	binding site for residue CO D 204

Chain	Residue
D	HOH457
E	HOH302
E	HOH341
E	HOH424
E	HOH457

site_id	AF5
Number of Residues	4
Details	binding site for residue CO D 205

Chain	Residue
D	GLU56
D	HOH302
D	HOH312
D	HOH441

site_id	AF6
Number of Residues	4
Details	binding site for residue CO D 206

Chain	Residue
D	HOH451
D	HOH494
F	HOH462
F	HOH481

site_id	AF7
Number of Residues	5
Details	binding site for residue CO E 201

Chain	Residue
B	HIS32
B	HOH317
E	ASP59
E	GLU63
E	HOH334

site_id	AF8
Number of Residues	6
Details	binding site for residue CO E 202

Chain	Residue
E	HIS16
E	HOH344
E	HOH413
E	HOH438
E	HOH447
E	HOH475

site_id	AF9
Number of Residues	6
Details	binding site for residue CO E 203

Chain	Residue
D	HOH316
E	HIS38
E	HOH381
F	ASP97
F	HOH322
F	HOH441

site_id	AG1
Number of Residues	7
Details	binding site for residue CO E 204

Chain	Residue
A	THR42
A	HOH324
E	ASN39
E	THR42
E	HOH338
F	THR42
F	HOH355

site_id	AG2
Number of Residues	4
Details	binding site for residue CO E 205

Chain	Residue
B	HOH317
B	HOH475
E	GLU56
E	HOH301

site_id	AG3
Number of Residues	5
Details	binding site for residue CO E 206

Chain	Residue
C	HOH315
C	HOH414
C	HOH440
E	HOH446
E	HOH471

site_id	AG4
Number of Residues	6
Details	binding site for residue CO E 207

Chain	Residue
C	ASP131
C	CO208
C	CO209
D	ASP131
E	ASP131
E	HOH398

site_id	AG5
Number of Residues	5
Details	binding site for residue CO F 201

Chain	Residue
F	HIS32
F	ASP59
F	GLU63
F	HOH316
F	HOH326

site_id	AG6
Number of Residues	6
Details	binding site for residue CO F 202

Chain	Residue
F	HIS16
F	CO205
F	HOH367
F	HOH436
F	HOH444
F	HOH450

site_id	AG7
Number of Residues	5
Details	binding site for residue CO F 203

Chain	Residue
A	CO209
B	CO208
F	ASP131
F	HOH332
F	HOH373

site_id	AG8
Number of Residues	6
Details	binding site for residue CO F 204

Chain	Residue
F	GLU56
F	HOH306
F	HOH406
F	HOH431
F	HOH464
F	HOH480

site_id	AG9
Number of Residues	4
Details	binding site for residue CO F 205

Chain	Residue
F	CO202
F	HOH367
F	HOH436
F	HOH444

Functional Information from PROSITE/UniProt

site_id	PS00818
Number of Residues	17
Details	DPS_1 Dps protein family signature 1. HWyMrGhnfftLHekmD

Chain	Residue	Details
A	HIS32-ASP48

site_id	PS00819
Number of Residues	15
Details	DPS_2 Dps protein family signature 2. MDeVAERllaIGgsP

Chain	Residue	Details
A	MET58-PRO72

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	6
Details	BINDING: BINDING => ECO:0000269\|PubMed:10625425

Chain	Residue	Details
A	HIS32
B	HIS32
C	HIS32
D	HIS32
E	HIS32
F	HIS32

site_id	SWS_FT_FI2
Number of Residues	6
Details	BINDING: in other chain => ECO:0000269\|PubMed:10625425

Chain	Residue	Details
A	ASP59
B	ASP59
C	ASP59
D	ASP59
E	ASP59
F	ASP59

site_id	SWS_FT_FI3
Number of Residues	6
Details	BINDING: BINDING => ECO:0000305\|PubMed:10625425

Chain	Residue	Details
A	GLU63
B	GLU63
C	GLU63
D	GLU63
E	GLU63
F	GLU63

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)