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6HVV

Yeast 20S proteasome with human beta2i (1-53) in complex with 39

Functional Information from GO Data
ChainGOidnamespacecontents
A0000502cellular_componentproteasome complex
A0003674molecular_functionmolecular_function
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005839cellular_componentproteasome core complex
A0006511biological_processubiquitin-dependent protein catabolic process
A0010498biological_processproteasomal protein catabolic process
A0010499biological_processproteasomal ubiquitin-independent protein catabolic process
A0019773cellular_componentproteasome core complex, alpha-subunit complex
A0034515cellular_componentproteasome storage granule
A0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
A0051603biological_processproteolysis involved in protein catabolic process
B0000502cellular_componentproteasome complex
B0003674molecular_functionmolecular_function
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005839cellular_componentproteasome core complex
B0006511biological_processubiquitin-dependent protein catabolic process
B0010498biological_processproteasomal protein catabolic process
B0010499biological_processproteasomal ubiquitin-independent protein catabolic process
B0019773cellular_componentproteasome core complex, alpha-subunit complex
B0034515cellular_componentproteasome storage granule
B0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
B0051603biological_processproteolysis involved in protein catabolic process
B0080129biological_processproteasome core complex assembly
C0000502cellular_componentproteasome complex
C0003674molecular_functionmolecular_function
C0004175molecular_functionendopeptidase activity
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005739cellular_componentmitochondrion
C0005829cellular_componentcytosol
C0005839cellular_componentproteasome core complex
C0006511biological_processubiquitin-dependent protein catabolic process
C0010498biological_processproteasomal protein catabolic process
C0010499biological_processproteasomal ubiquitin-independent protein catabolic process
C0019773cellular_componentproteasome core complex, alpha-subunit complex
C0019774cellular_componentproteasome core complex, beta-subunit complex
C0034515cellular_componentproteasome storage granule
C0042175cellular_componentnuclear outer membrane-endoplasmic reticulum membrane network
C0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
C0051603biological_processproteolysis involved in protein catabolic process
D0000502cellular_componentproteasome complex
D0003674molecular_functionmolecular_function
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005839cellular_componentproteasome core complex
D0006511biological_processubiquitin-dependent protein catabolic process
D0010498biological_processproteasomal protein catabolic process
D0010499biological_processproteasomal ubiquitin-independent protein catabolic process
D0019773cellular_componentproteasome core complex, alpha-subunit complex
D0034515cellular_componentproteasome storage granule
D0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
D0051603biological_processproteolysis involved in protein catabolic process
E0000502cellular_componentproteasome complex
E0003674molecular_functionmolecular_function
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005737cellular_componentcytoplasm
E0005839cellular_componentproteasome core complex
E0006511biological_processubiquitin-dependent protein catabolic process
E0010498biological_processproteasomal protein catabolic process
E0010499biological_processproteasomal ubiquitin-independent protein catabolic process
E0019773cellular_componentproteasome core complex, alpha-subunit complex
E0034515cellular_componentproteasome storage granule
E0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
E0051603biological_processproteolysis involved in protein catabolic process
F0000502cellular_componentproteasome complex
F0003729molecular_functionmRNA binding
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005737cellular_componentcytoplasm
F0005839cellular_componentproteasome core complex
F0006511biological_processubiquitin-dependent protein catabolic process
F0010498biological_processproteasomal protein catabolic process
F0010499biological_processproteasomal ubiquitin-independent protein catabolic process
F0019773cellular_componentproteasome core complex, alpha-subunit complex
F0034515cellular_componentproteasome storage granule
F0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
F0051603biological_processproteolysis involved in protein catabolic process
G0000502cellular_componentproteasome complex
G0003674molecular_functionmolecular_function
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005737cellular_componentcytoplasm
G0005739cellular_componentmitochondrion
G0005829cellular_componentcytosol
G0005839cellular_componentproteasome core complex
G0006511biological_processubiquitin-dependent protein catabolic process
G0010498biological_processproteasomal protein catabolic process
G0010499biological_processproteasomal ubiquitin-independent protein catabolic process
G0019773cellular_componentproteasome core complex, alpha-subunit complex
G0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
G0051603biological_processproteolysis involved in protein catabolic process
H0004298molecular_functionthreonine-type endopeptidase activity
H0005839cellular_componentproteasome core complex
H0051603biological_processproteolysis involved in protein catabolic process
I0000502cellular_componentproteasome complex
I0005515molecular_functionprotein binding
I0005634cellular_componentnucleus
I0005737cellular_componentcytoplasm
I0005829cellular_componentcytosol
I0005839cellular_componentproteasome core complex
I0010499biological_processproteasomal ubiquitin-independent protein catabolic process
I0019774cellular_componentproteasome core complex, beta-subunit complex
I0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
I0051603biological_processproteolysis involved in protein catabolic process
I0061133molecular_functionendopeptidase activator activity
J0000502cellular_componentproteasome complex
J0005515molecular_functionprotein binding
J0005634cellular_componentnucleus
J0005737cellular_componentcytoplasm
J0005789cellular_componentendoplasmic reticulum membrane
J0005829cellular_componentcytosol
J0005839cellular_componentproteasome core complex
J0010498biological_processproteasomal protein catabolic process
J0010499biological_processproteasomal ubiquitin-independent protein catabolic process
J0019774cellular_componentproteasome core complex, beta-subunit complex
J0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
J0051603biological_processproteolysis involved in protein catabolic process
J0061133molecular_functionendopeptidase activator activity
K0004298molecular_functionthreonine-type endopeptidase activity
K0005839cellular_componentproteasome core complex
K0051603biological_processproteolysis involved in protein catabolic process
L0000502cellular_componentproteasome complex
L0003674molecular_functionmolecular_function
L0005515molecular_functionprotein binding
L0005634cellular_componentnucleus
L0005737cellular_componentcytoplasm
L0005829cellular_componentcytosol
L0005839cellular_componentproteasome core complex
L0010499biological_processproteasomal ubiquitin-independent protein catabolic process
L0019774cellular_componentproteasome core complex, beta-subunit complex
L0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
L0051603biological_processproteolysis involved in protein catabolic process
M0000502cellular_componentproteasome complex
M0003674molecular_functionmolecular_function
M0005515molecular_functionprotein binding
M0005634cellular_componentnucleus
M0005737cellular_componentcytoplasm
M0005829cellular_componentcytosol
M0005839cellular_componentproteasome core complex
M0010499biological_processproteasomal ubiquitin-independent protein catabolic process
M0019774cellular_componentproteasome core complex, beta-subunit complex
M0034515cellular_componentproteasome storage granule
M0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
M0043248biological_processproteasome assembly
M0051603biological_processproteolysis involved in protein catabolic process
N0000502cellular_componentproteasome complex
N0004175molecular_functionendopeptidase activity
N0004298molecular_functionthreonine-type endopeptidase activity
N0005634cellular_componentnucleus
N0005737cellular_componentcytoplasm
N0005829cellular_componentcytosol
N0005839cellular_componentproteasome core complex
N0006508biological_processproteolysis
N0008233molecular_functionpeptidase activity
N0010499biological_processproteasomal ubiquitin-independent protein catabolic process
N0016787molecular_functionhydrolase activity
N0019774cellular_componentproteasome core complex, beta-subunit complex
N0034515cellular_componentproteasome storage granule
N0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
N0051603biological_processproteolysis involved in protein catabolic process
O0000502cellular_componentproteasome complex
O0003674molecular_functionmolecular_function
O0005515molecular_functionprotein binding
O0005634cellular_componentnucleus
O0005737cellular_componentcytoplasm
O0005839cellular_componentproteasome core complex
O0006511biological_processubiquitin-dependent protein catabolic process
O0010498biological_processproteasomal protein catabolic process
O0010499biological_processproteasomal ubiquitin-independent protein catabolic process
O0019773cellular_componentproteasome core complex, alpha-subunit complex
O0034515cellular_componentproteasome storage granule
O0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
O0051603biological_processproteolysis involved in protein catabolic process
P0000502cellular_componentproteasome complex
P0003674molecular_functionmolecular_function
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0005737cellular_componentcytoplasm
P0005829cellular_componentcytosol
P0005839cellular_componentproteasome core complex
P0006511biological_processubiquitin-dependent protein catabolic process
P0010498biological_processproteasomal protein catabolic process
P0010499biological_processproteasomal ubiquitin-independent protein catabolic process
P0019773cellular_componentproteasome core complex, alpha-subunit complex
P0034515cellular_componentproteasome storage granule
P0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
P0051603biological_processproteolysis involved in protein catabolic process
P0080129biological_processproteasome core complex assembly
Q0000502cellular_componentproteasome complex
Q0003674molecular_functionmolecular_function
Q0004175molecular_functionendopeptidase activity
Q0005515molecular_functionprotein binding
Q0005634cellular_componentnucleus
Q0005737cellular_componentcytoplasm
Q0005739cellular_componentmitochondrion
Q0005829cellular_componentcytosol
Q0005839cellular_componentproteasome core complex
Q0006511biological_processubiquitin-dependent protein catabolic process
Q0010498biological_processproteasomal protein catabolic process
Q0010499biological_processproteasomal ubiquitin-independent protein catabolic process
Q0019773cellular_componentproteasome core complex, alpha-subunit complex
Q0019774cellular_componentproteasome core complex, beta-subunit complex
Q0034515cellular_componentproteasome storage granule
Q0042175cellular_componentnuclear outer membrane-endoplasmic reticulum membrane network
Q0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
Q0051603biological_processproteolysis involved in protein catabolic process
R0000502cellular_componentproteasome complex
R0003674molecular_functionmolecular_function
R0005515molecular_functionprotein binding
R0005634cellular_componentnucleus
R0005737cellular_componentcytoplasm
R0005839cellular_componentproteasome core complex
R0006511biological_processubiquitin-dependent protein catabolic process
R0010498biological_processproteasomal protein catabolic process
R0010499biological_processproteasomal ubiquitin-independent protein catabolic process
R0019773cellular_componentproteasome core complex, alpha-subunit complex
R0034515cellular_componentproteasome storage granule
R0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
R0051603biological_processproteolysis involved in protein catabolic process
S0000502cellular_componentproteasome complex
S0003674molecular_functionmolecular_function
S0005515molecular_functionprotein binding
S0005634cellular_componentnucleus
S0005737cellular_componentcytoplasm
S0005839cellular_componentproteasome core complex
S0006511biological_processubiquitin-dependent protein catabolic process
S0010498biological_processproteasomal protein catabolic process
S0010499biological_processproteasomal ubiquitin-independent protein catabolic process
S0019773cellular_componentproteasome core complex, alpha-subunit complex
S0034515cellular_componentproteasome storage granule
S0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
S0051603biological_processproteolysis involved in protein catabolic process
T0000502cellular_componentproteasome complex
T0003729molecular_functionmRNA binding
T0005515molecular_functionprotein binding
T0005634cellular_componentnucleus
T0005737cellular_componentcytoplasm
T0005839cellular_componentproteasome core complex
T0006511biological_processubiquitin-dependent protein catabolic process
T0010498biological_processproteasomal protein catabolic process
T0010499biological_processproteasomal ubiquitin-independent protein catabolic process
T0019773cellular_componentproteasome core complex, alpha-subunit complex
T0034515cellular_componentproteasome storage granule
T0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
T0051603biological_processproteolysis involved in protein catabolic process
U0000502cellular_componentproteasome complex
U0003674molecular_functionmolecular_function
U0005515molecular_functionprotein binding
U0005634cellular_componentnucleus
U0005737cellular_componentcytoplasm
U0005739cellular_componentmitochondrion
U0005829cellular_componentcytosol
U0005839cellular_componentproteasome core complex
U0006511biological_processubiquitin-dependent protein catabolic process
U0010498biological_processproteasomal protein catabolic process
U0010499biological_processproteasomal ubiquitin-independent protein catabolic process
U0019773cellular_componentproteasome core complex, alpha-subunit complex
U0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
U0051603biological_processproteolysis involved in protein catabolic process
V0004298molecular_functionthreonine-type endopeptidase activity
V0005839cellular_componentproteasome core complex
V0051603biological_processproteolysis involved in protein catabolic process
W0000502cellular_componentproteasome complex
W0005515molecular_functionprotein binding
W0005634cellular_componentnucleus
W0005737cellular_componentcytoplasm
W0005829cellular_componentcytosol
W0005839cellular_componentproteasome core complex
W0010499biological_processproteasomal ubiquitin-independent protein catabolic process
W0019774cellular_componentproteasome core complex, beta-subunit complex
W0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
W0051603biological_processproteolysis involved in protein catabolic process
W0061133molecular_functionendopeptidase activator activity
X0000502cellular_componentproteasome complex
X0005515molecular_functionprotein binding
X0005634cellular_componentnucleus
X0005737cellular_componentcytoplasm
X0005789cellular_componentendoplasmic reticulum membrane
X0005829cellular_componentcytosol
X0005839cellular_componentproteasome core complex
X0010498biological_processproteasomal protein catabolic process
X0010499biological_processproteasomal ubiquitin-independent protein catabolic process
X0019774cellular_componentproteasome core complex, beta-subunit complex
X0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
X0051603biological_processproteolysis involved in protein catabolic process
X0061133molecular_functionendopeptidase activator activity
Y0004298molecular_functionthreonine-type endopeptidase activity
Y0005839cellular_componentproteasome core complex
Y0051603biological_processproteolysis involved in protein catabolic process
Z0000502cellular_componentproteasome complex
Z0003674molecular_functionmolecular_function
Z0005515molecular_functionprotein binding
Z0005634cellular_componentnucleus
Z0005737cellular_componentcytoplasm
Z0005829cellular_componentcytosol
Z0005839cellular_componentproteasome core complex
Z0010499biological_processproteasomal ubiquitin-independent protein catabolic process
Z0019774cellular_componentproteasome core complex, beta-subunit complex
Z0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
Z0051603biological_processproteolysis involved in protein catabolic process
a0000502cellular_componentproteasome complex
a0003674molecular_functionmolecular_function
a0005515molecular_functionprotein binding
a0005634cellular_componentnucleus
a0005737cellular_componentcytoplasm
a0005829cellular_componentcytosol
a0005839cellular_componentproteasome core complex
a0010499biological_processproteasomal ubiquitin-independent protein catabolic process
a0019774cellular_componentproteasome core complex, beta-subunit complex
a0034515cellular_componentproteasome storage granule
a0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
a0043248biological_processproteasome assembly
a0051603biological_processproteolysis involved in protein catabolic process
b0000502cellular_componentproteasome complex
b0004175molecular_functionendopeptidase activity
b0004298molecular_functionthreonine-type endopeptidase activity
b0005634cellular_componentnucleus
b0005737cellular_componentcytoplasm
b0005829cellular_componentcytosol
b0005839cellular_componentproteasome core complex
b0006508biological_processproteolysis
b0008233molecular_functionpeptidase activity
b0010499biological_processproteasomal ubiquitin-independent protein catabolic process
b0016787molecular_functionhydrolase activity
b0019774cellular_componentproteasome core complex, beta-subunit complex
b0034515cellular_componentproteasome storage granule
b0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
b0051603biological_processproteolysis involved in protein catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG G 301
ChainResidue
GTHR8
GTYR119
GARG122
GALA123
GMET125

site_idAC2
Number of Residues3
Detailsbinding site for residue CL G 302
ChainResidue
GARG111
GASN114
HTYR69

site_idAC3
Number of Residues15
Detailsbinding site for residue GT8 H 301
ChainResidue
HALA20
HTHR21
HASN22
HGLY45
HGLY47
HVAL48
HALA49
HGLU53
HSER129
HGLY168
HMES302
IASP124
ILEU125
IHOH403
HTHR1

site_idAC4
Number of Residues5
Detailsbinding site for residue MES H 302
ChainResidue
HGLY47
HGLY128
HSER129
HGT8301
ZTYR33

site_idAC5
Number of Residues4
Detailsbinding site for residue MG I 301
ChainResidue
IALA174
IASP177
ISER180
IASP204

site_idAC6
Number of Residues16
Detailsbinding site for residue GT8 K 301
ChainResidue
KTHR1
KARG19
KALA20
KTHR21
KVAL31
KLYS32
KMET45
KGLY47
KGLY48
KALA49
KSER131
KTYR170
KHOH404
KHOH414
LASP126
LVAL128

site_idAC7
Number of Residues6
Detailsbinding site for residue MG K 302
ChainResidue
KALA165
KHIS166
KASP168
KALA169
KSER171
WASP204

site_idAC8
Number of Residues5
Detailsbinding site for residue MG N 201
ChainResidue
NARG19
NILE163
NASP166
NSER169
aLEU34

site_idAC9
Number of Residues3
Detailsbinding site for residue CL U 301
ChainResidue
UARG111
UASN114
VTYR69

site_idAD1
Number of Residues5
Detailsbinding site for residue MG V 302
ChainResidue
LASP222
VILE163
VTRP164
VASP166
VSER169

site_idAD2
Number of Residues4
Detailsbinding site for residue MES V 303
ChainResidue
LTYR33
VGLY47
VSER129
VGT8301

site_idAD3
Number of Residues4
Detailsbinding site for residue MG W 301
ChainResidue
WALA174
WASP177
WSER180
WASP204

site_idAD4
Number of Residues5
Detailsbinding site for residue MG Y 302
ChainResidue
IASP204
YALA165
YHIS166
YASP168
YALA169

site_idAD5
Number of Residues5
Detailsbinding site for residue MG Z 301
ChainResidue
ZARG28
ZTHR192
ZHIS195
ZVAL198
ZASP222

site_idAD6
Number of Residues22
Detailsbinding site for Di-peptide GT8 V 301 and THR V 1
ChainResidue
VSER129
VGLY130
VGLY168
VSER169
VMES303
VHOH403
WASP124
WLEU125
VTHR2
VILE3
VASP17
VALA20
VTHR21
VASN22
VLYS33
VHIS35
VGLY45
VALA46
VGLY47
VVAL48
VALA49
VGLY128

site_idAD7
Number of Residues22
Detailsbinding site for Di-peptide GT8 V 301 and THR V 1
ChainResidue
VTHR2
VILE3
VASP17
VALA20
VTHR21
VASN22
VLYS33
VHIS35
VGLY45
VALA46
VGLY47
VVAL48
VALA49
VGLY128
VSER129
VGLY130
VGLY168
VSER169
VMES303
VHOH403
WASP124
WLEU125

site_idAD8
Number of Residues21
Detailsbinding site for Di-peptide GT8 Y 301 and THR Y 1
ChainResidue
YTHR2
YTHR3
YASP17
YARG19
YALA20
YTHR21
YVAL31
YLYS32
YLYS33
YMET45
YALA46
YGLY47
YGLY48
YALA49
YGLY130
YSER131
YGLY132
YTYR170
YSER171
ZASP126
ZVAL128

site_idAD9
Number of Residues21
Detailsbinding site for Di-peptide GT8 Y 301 and THR Y 1
ChainResidue
YTHR2
YTHR3
YASP17
YARG19
YALA20
YTHR21
YVAL31
YLYS32
YLYS33
YMET45
YALA46
YGLY47
YGLY48
YALA49
YGLY130
YSER131
YGLY132
YTYR170
YSER171
ZASP126
ZVAL128

Functional Information from PROSITE/UniProt
site_idPS00388
Number of Residues23
DetailsPROTEASOME_ALPHA_1 Proteasome alpha-type subunits signature. YsfslTtFSPsGKlgQIDYAltA
ChainResidueDetails
ATYR5-ALA27
GTYR3-ALA25
BTYR5-SER27
DTYR0-ALA22
CTYR2-ALA24
ETYR5-ALA27
FTYR4-ALA26

site_idPS00854
Number of Residues48
DetailsPROTEASOME_BETA_1 Proteasome beta-type subunits signature. AGLvFqdGVILGADtratndsvvadksce.KihfiapkiyccgaGvaAD
ChainResidueDetails
HALA4-ASP51
bMET4-ASP51
BILE35-ASP82
LLEU13-ASP60
CVAL32-ASP79
aILE12-ASP59
JLEU5-ASP52
IVAL12-ASP58
KLEU4-ASP51

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000269|PubMed:9087403
ChainResidueDetails
NTHR1
bTHR1
BLYS198
BLYS230
PLYS99
PLYS198
PLYS230

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
KALA49
YALA49
WLYS69

site_idSWS_FT_FI3
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
ChainResidueDetails
GLYS223
RSER243
ULYS223

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 177
ChainResidueDetails
HSER129activator, electrostatic stabiliser
HASP166activator, steric locator
HSER169activator, electrostatic stabiliser

site_idMCSA2
Number of Residues3
DetailsM-CSA 177
ChainResidueDetails
VSER129activator, electrostatic stabiliser
VASP166activator, steric locator
VSER169activator, electrostatic stabiliser

218853

PDB entries from 2024-04-24

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