6HP8
Crystal structure of DPP8 in complex with Val-BoroPro
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004177 | molecular_function | aminopeptidase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006508 | biological_process | proteolysis |
| A | 0006915 | biological_process | apoptotic process |
| A | 0006955 | biological_process | immune response |
| A | 0008236 | molecular_function | serine-type peptidase activity |
| A | 0008239 | molecular_function | dipeptidyl-peptidase activity |
| A | 0043069 | biological_process | negative regulation of programmed cell death |
| B | 0004177 | molecular_function | aminopeptidase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006508 | biological_process | proteolysis |
| B | 0006915 | biological_process | apoptotic process |
| B | 0006955 | biological_process | immune response |
| B | 0008236 | molecular_function | serine-type peptidase activity |
| B | 0008239 | molecular_function | dipeptidyl-peptidase activity |
| B | 0043069 | biological_process | negative regulation of programmed cell death |
| C | 0004177 | molecular_function | aminopeptidase activity |
| C | 0005515 | molecular_function | protein binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0006508 | biological_process | proteolysis |
| C | 0006915 | biological_process | apoptotic process |
| C | 0006955 | biological_process | immune response |
| C | 0008236 | molecular_function | serine-type peptidase activity |
| C | 0008239 | molecular_function | dipeptidyl-peptidase activity |
| C | 0043069 | biological_process | negative regulation of programmed cell death |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 11 |
| Details | binding site for residue GK2 A 901 |
| Chain | Residue |
| A | ARG160 |
| A | ASN835 |
| A | HIS865 |
| A | GLU275 |
| A | GLU276 |
| A | TYR669 |
| A | GLN673 |
| A | SER755 |
| A | TYR756 |
| A | TYR787 |
| A | TYR791 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue NA A 902 |
| Chain | Residue |
| A | ARG158 |
| A | GLN274 |
| A | GLU275 |
| A | ASP278 |
| A | TYR280 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | binding site for residue GOL A 903 |
| Chain | Residue |
| A | HIS315 |
| A | THR317 |
| A | ARG324 |
| A | ALA326 |
| A | PHE831 |
| A | HIS837 |
| A | HOH1083 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue GOL A 904 |
| Chain | Residue |
| A | HIS188 |
| A | LEU206 |
| A | GLU208 |
| A | ILE241 |
| A | HOH1003 |
| site_id | AC5 |
| Number of Residues | 9 |
| Details | binding site for residue GOL A 905 |
| Chain | Residue |
| A | GLY526 |
| A | SER527 |
| A | ASN528 |
| A | ILE529 |
| A | GLN530 |
| A | GLU541 |
| A | CYS575 |
| A | ILE577 |
| A | HOH1014 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | binding site for residue GOL A 906 |
| Chain | Residue |
| A | ASN448 |
| A | HIS525 |
| A | GLN673 |
| A | HOH1031 |
| A | HOH1102 |
| A | HOH1166 |
| A | HOH1201 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 907 |
| Chain | Residue |
| A | TRP383 |
| A | THR384 |
| A | PRO385 |
| A | TRP391 |
| A | PHE453 |
| A | VAL455 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | binding site for residue NA B 902 |
| Chain | Residue |
| B | ARG158 |
| B | GLN274 |
| B | ASP278 |
| B | TYR280 |
| B | HOH1131 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 903 |
| Chain | Residue |
| B | THR317 |
| B | ARG324 |
| B | ARG325 |
| C | HIS315 |
| C | HIS837 |
| C | GOL903 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 904 |
| Chain | Residue |
| A | HOH1011 |
| B | HIS188 |
| B | LEU206 |
| B | GLU208 |
| B | ILE241 |
| B | ARG244 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 905 |
| Chain | Residue |
| B | TRP383 |
| B | TRP391 |
| B | PHE453 |
| B | HIS454 |
| B | VAL455 |
| B | HOH1002 |
| site_id | AD3 |
| Number of Residues | 7 |
| Details | binding site for residue GOL B 906 |
| Chain | Residue |
| B | ASN448 |
| B | ILE449 |
| B | ARG524 |
| B | GLN673 |
| B | ARG794 |
| B | HOH1025 |
| B | HOH1051 |
| site_id | AD4 |
| Number of Residues | 8 |
| Details | binding site for residue GOL B 907 |
| Chain | Residue |
| B | GLY526 |
| B | SER527 |
| B | ASN528 |
| B | GLN530 |
| B | GLU541 |
| B | CYS575 |
| B | ILE577 |
| B | HOH1174 |
| site_id | AD5 |
| Number of Residues | 5 |
| Details | binding site for residue NA C 902 |
| Chain | Residue |
| C | ARG158 |
| C | GLN274 |
| C | ASP278 |
| C | TYR280 |
| C | HOH1007 |
| site_id | AD6 |
| Number of Residues | 8 |
| Details | binding site for residue GOL C 903 |
| Chain | Residue |
| C | ALA326 |
| C | PHE831 |
| B | HIS315 |
| B | HIS837 |
| B | GOL903 |
| B | HOH1115 |
| C | THR317 |
| C | ARG324 |
| site_id | AD7 |
| Number of Residues | 5 |
| Details | binding site for residue GOL C 904 |
| Chain | Residue |
| C | TRP383 |
| C | TRP391 |
| C | PHE453 |
| C | HIS454 |
| C | VAL455 |
| site_id | AD8 |
| Number of Residues | 10 |
| Details | binding site for residue GOL C 905 |
| Chain | Residue |
| C | ASN448 |
| C | ARG524 |
| C | HIS525 |
| C | GLN673 |
| C | ARG794 |
| C | HOH1004 |
| C | HOH1030 |
| C | HOH1067 |
| C | HOH1123 |
| C | HOH1166 |
| site_id | AD9 |
| Number of Residues | 6 |
| Details | binding site for residue GOL C 906 |
| Chain | Residue |
| C | GLY526 |
| C | SER527 |
| C | ASN528 |
| C | GLU541 |
| C | CYS575 |
| C | ILE577 |
| site_id | AE1 |
| Number of Residues | 2 |
| Details | binding site for residue GOL C 907 |
| Chain | Residue |
| C | HIS595 |
| C | LYS682 |
| site_id | AE2 |
| Number of Residues | 17 |
| Details | binding site for Di-peptide GK2 B 901 and SER B 755 |
| Chain | Residue |
| B | ARG160 |
| B | GLU275 |
| B | GLU276 |
| B | TYR669 |
| B | GLN673 |
| B | TRP754 |
| B | TYR756 |
| B | GLY757 |
| B | GLY758 |
| B | TYR759 |
| B | GLY778 |
| B | ALA779 |
| B | PRO780 |
| B | TYR787 |
| B | TYR791 |
| B | ASN835 |
| B | HIS865 |
| site_id | AE3 |
| Number of Residues | 17 |
| Details | binding site for Di-peptide GK2 C 901 and SER C 755 |
| Chain | Residue |
| C | ARG160 |
| C | GLU275 |
| C | GLU276 |
| C | TYR669 |
| C | GLN673 |
| C | TRP754 |
| C | TYR756 |
| C | GLY757 |
| C | GLY758 |
| C | TYR759 |
| C | GLY778 |
| C | ALA779 |
| C | TYR787 |
| C | TYR791 |
| C | ASN835 |
| C | HIS865 |
| C | HOH1150 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 9 |
| Details | ACT_SITE: Charge relay system => ECO:0000305|PubMed:12534281, ECO:0000305|PubMed:29382749 |
| Chain | Residue | Details |
| A | SER755 | |
| A | ASP833 | |
| A | HIS865 | |
| B | SER755 | |
| B | ASP833 | |
| B | HIS865 | |
| C | SER755 | |
| C | ASP833 | |
| C | HIS865 |
