6HOI
Structure of Beclin1 LIR motif bound to GABARAPL1
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000045 | biological_process | autophagosome assembly |
| A | 0000421 | cellular_component | autophagosome membrane |
| A | 0000423 | biological_process | mitophagy |
| A | 0005515 | molecular_function | protein binding |
| A | 0005543 | molecular_function | phospholipid binding |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0005776 | cellular_component | autophagosome |
| A | 0005783 | cellular_component | endoplasmic reticulum |
| A | 0005794 | cellular_component | Golgi apparatus |
| A | 0005829 | cellular_component | cytosol |
| A | 0005856 | cellular_component | cytoskeleton |
| A | 0006995 | biological_process | cellular response to nitrogen starvation |
| A | 0008429 | molecular_function | phosphatidylethanolamine binding |
| A | 0030659 | cellular_component | cytoplasmic vesicle membrane |
| A | 0030957 | molecular_function | Tat protein binding |
| A | 0031625 | molecular_function | ubiquitin protein ligase binding |
| A | 0048487 | molecular_function | beta-tubulin binding |
| A | 0050811 | molecular_function | GABA receptor binding |
| A | 0061723 | biological_process | glycophagy |
| A | 0097352 | biological_process | autophagosome maturation |
| B | 0000045 | biological_process | autophagosome assembly |
| B | 0000421 | cellular_component | autophagosome membrane |
| B | 0000423 | biological_process | mitophagy |
| B | 0005515 | molecular_function | protein binding |
| B | 0005543 | molecular_function | phospholipid binding |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0005776 | cellular_component | autophagosome |
| B | 0005783 | cellular_component | endoplasmic reticulum |
| B | 0005794 | cellular_component | Golgi apparatus |
| B | 0005829 | cellular_component | cytosol |
| B | 0005856 | cellular_component | cytoskeleton |
| B | 0006995 | biological_process | cellular response to nitrogen starvation |
| B | 0008429 | molecular_function | phosphatidylethanolamine binding |
| B | 0030659 | cellular_component | cytoplasmic vesicle membrane |
| B | 0030957 | molecular_function | Tat protein binding |
| B | 0031625 | molecular_function | ubiquitin protein ligase binding |
| B | 0048487 | molecular_function | beta-tubulin binding |
| B | 0050811 | molecular_function | GABA receptor binding |
| B | 0061723 | biological_process | glycophagy |
| B | 0097352 | biological_process | autophagosome maturation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 9 |
| Details | binding site for residue EDO A 201 |
| Chain | Residue |
| A | ARG65 |
| A | LEU70 |
| A | ARG71 |
| A | PRO72 |
| A | ASN81 |
| A | HOH326 |
| A | HOH375 |
| B | PRO72 |
| B | GLU73 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue ACT A 202 |
| Chain | Residue |
| A | ARG67 |
| A | ILE68 |
| A | HIS69 |
| A | HIS99 |
| A | GLU101 |
| A | HOH370 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue ACT B 201 |
| Chain | Residue |
| B | ASP45 |
| B | LYS46 |
| B | TYR49 |
| B | ARG67 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue ACT F 201 |
| Chain | Residue |
| F | ILE100 |
| F | GLY101 |
| F | HOH301 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | Propeptide: {"description":"Removed in mature form","featureId":"PRO_0000420208","evidences":[{"source":"PubMed","id":"20404487","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Site: {"description":"(Microbial infection) Cleavage; by RavZ","evidences":[{"source":"PubMed","id":"23112293","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Site: {"description":"Cleavage; by ATG4B","evidences":[{"source":"PubMed","id":"20404487","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Lipidation: {"description":"Phosphatidylserine amidated glycine; alternate","evidences":[{"source":"PubMed","id":"33909989","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine; by AMPK","evidences":[{"source":"PubMed","id":"25891078","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
