Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6HLX

Structure of the PBP AgaA in complex with agropinic acid from A.tumefacien R10

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0015833	biological_process	peptide transport
A	0030288	cellular_component	outer membrane-bounded periplasmic space
A	0042597	cellular_component	periplasmic space
A	0043190	cellular_component	ATP-binding cassette (ABC) transporter complex
A	0046872	molecular_function	metal ion binding
A	0055085	biological_process	transmembrane transport
A	1904680	molecular_function	peptide transmembrane transporter activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue GOL A 601

Chain	Residue
A	GLN91
A	LYS93
A	TYR204
A	ACT611

site_id	AC2
Number of Residues	6
Details	binding site for residue GOL A 602

Chain	Residue
A	HOH985
A	PRO252
A	LYS442
A	HOH748
A	HOH775
A	HOH798

site_id	AC3
Number of Residues	9
Details	binding site for residue GOL A 603

Chain	Residue
A	GLY307
A	ILE308
A	GLY316
A	TYR317
A	SER318
A	LYS321
A	ALA322
A	VAL460
A	HOH742

site_id	AC4
Number of Residues	20
Details	binding site for residue G9Z A 604

Chain	Residue
A	GLN43
A	GLY45
A	THR46
A	TYR239
A	GLN267
A	TYR355
A	PHE357
A	GLN358
A	TRP383
A	ARG386
A	GLY401
A	THR425
A	ASN426
A	ARG475
A	PHE497
A	HOH724
A	HOH780
A	HOH960
A	HOH975
A	HOH1029

site_id	AC5
Number of Residues	9
Details	binding site for residue MES A 605

Chain	Residue
A	GLY313
A	TYR314
A	MET315
A	THR407
A	ASP408
A	ALA409
A	LYS449
A	EDO626
A	HOH862

site_id	AC6
Number of Residues	2
Details	binding site for residue ACT A 606

Chain	Residue
A	ASP319
A	ALA320

site_id	AC7
Number of Residues	5
Details	binding site for residue ACT A 607

Chain	Residue
A	SER75
A	TYR76
A	ASP382
A	EDO630
A	HOH847

site_id	AC8
Number of Residues	5
Details	binding site for residue ACT A 608

Chain	Residue
A	ASN123
A	TYR417
A	ARG444
A	HOH829
A	HOH845

site_id	AC9
Number of Residues	3
Details	binding site for residue ACT A 609

Chain	Residue
A	ARG462
A	GLU465
A	HOH973

site_id	AD1
Number of Residues	3
Details	binding site for residue ACT A 610

Chain	Residue
A	LYS205
A	LYS208
A	HOH999

site_id	AD2
Number of Residues	5
Details	binding site for residue ACT A 611

Chain	Residue
A	ARG348
A	LYS377
A	GOL601
A	SO4622
A	HOH850

site_id	AD3
Number of Residues	3
Details	binding site for residue ACT A 612

Chain	Residue
A	GLY25
A	HIS510
A	HOH876

site_id	AD4
Number of Residues	3
Details	binding site for residue ZN A 613

Chain	Residue
A	GLU194
A	HIS215
A	HIS515

site_id	AD5
Number of Residues	5
Details	binding site for residue ZN A 614

Chain	Residue
A	ASP289
A	HIS328
A	GLU330
A	HOH1026
A	HOH1073

site_id	AD6
Number of Residues	5
Details	binding site for residue ZN A 615

Chain	Residue
A	HIS327
A	VAL329
A	GLU330
A	HOH726
A	HOH1098

site_id	AD7
Number of Residues	4
Details	binding site for residue ZN A 616

Chain	Residue
A	ASP235
A	HIS511
A	HIS513
A	HOH1032

site_id	AD8
Number of Residues	4
Details	binding site for residue ZN A 617

Chain	Residue
A	GLU77
A	HIS88
A	HOH784
A	HOH1004

site_id	AD9
Number of Residues	4
Details	binding site for residue ZN A 618

Chain	Residue
A	GLU213
A	HIS510
A	HIS512
A	HOH930

site_id	AE1
Number of Residues	3
Details	binding site for residue SO4 A 619

Chain	Residue
A	LYS206
A	GLY207
A	HOH1011

site_id	AE2
Number of Residues	6
Details	binding site for residue SO4 A 620

Chain	Residue
A	ASP420
A	LEU422
A	VAL423
A	EDO634
A	HOH701
A	HOH746

site_id	AE3
Number of Residues	5
Details	binding site for residue SO4 A 621

Chain	Residue
A	LYS185
A	LYS199
A	PHE200
A	ASP201
A	ASP202

site_id	AE4
Number of Residues	7
Details	binding site for residue SO4 A 622

Chain	Residue
A	GLN91
A	GLN366
A	LYS377
A	LEU378
A	ACT611
A	HOH856
A	HOH1045

site_id	AE5
Number of Residues	6
Details	binding site for residue EDO A 623

Chain	Residue
A	ASN295
A	THR296
A	ALA297
A	PHE298
A	ASN299
A	HOH936

site_id	AE6
Number of Residues	6
Details	binding site for residue EDO A 624

Chain	Residue
A	TRP189
A	THR190
A	ARG191
A	ASP448
A	LYS449
A	HOH767

site_id	AE7
Number of Residues	5
Details	binding site for residue EDO A 625

Chain	Residue
A	ARG111
A	ASN170
A	ALA171
A	ASN173
A	HOH928

site_id	AE8
Number of Residues	3
Details	binding site for residue EDO A 626

Chain	Residue
A	LYS449
A	MES605
A	HOH768

site_id	AE9
Number of Residues	8
Details	binding site for residue EDO A 627

Chain	Residue
A	PRO241
A	ALA242
A	ALA297
A	PHE357
A	HOH706
A	HOH728
A	HOH936
A	HOH1053

site_id	AF1
Number of Residues	3
Details	binding site for residue EDO A 628

Chain	Residue
A	ASN269
A	TYR395
A	ASP396

site_id	AF2
Number of Residues	6
Details	binding site for residue EDO A 629

Chain	Residue
A	ALA445
A	VAL447
A	ASP448
A	HOH716
A	HOH884
A	HOH942

site_id	AF3
Number of Residues	9
Details	binding site for residue EDO A 630

Chain	Residue
A	PRO70
A	GLU74
A	SER75
A	PRO381
A	ASP382
A	SER385
A	ACT607
A	HOH714
A	HOH1040

site_id	AF4
Number of Residues	5
Details	binding site for residue EDO A 631

Chain	Residue
A	THR260
A	PRO311
A	LYS312
A	TRP474
A	HOH771

site_id	AF5
Number of Residues	2
Details	binding site for residue EDO A 632

Chain	Residue
A	GLU136
A	HOH752

site_id	AF6
Number of Residues	3
Details	binding site for residue EDO A 633

Chain	Residue
A	GLU132
A	THR133
A	PRO134

site_id	AF7
Number of Residues	2
Details	binding site for residue EDO A 634

Chain	Residue
A	THR392
A	SO4620

site_id	AF8
Number of Residues	4
Details	binding site for residue EDO A 635

Chain	Residue
A	ARG111
A	GLY117
A	LYS118
A	HOH812

site_id	AF9
Number of Residues	3
Details	binding site for residue EDO A 636

Chain	Residue
A	GLU110
A	HOH770
A	HOH918

site_id	AG1
Number of Residues	7
Details	binding site for residue PEG A 637

Chain	Residue
A	ASN223
A	LYS243
A	SER356
A	ASN360
A	HOH734
A	HOH743
A	HOH762

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)