6HLM
Variant G129D of NuoEF from Aquifex aeolicus bound to NAD+
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003954 | molecular_function | NADH dehydrogenase activity |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0045271 | cellular_component | respiratory chain complex I |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0048038 | molecular_function | quinone binding |
| A | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| B | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
| B | 0010181 | molecular_function | FMN binding |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0048038 | molecular_function | quinone binding |
| B | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| B | 1902600 | biological_process | proton transmembrane transport |
| C | 0003954 | molecular_function | NADH dehydrogenase activity |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0045271 | cellular_component | respiratory chain complex I |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0048038 | molecular_function | quinone binding |
| C | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| D | 0008137 | molecular_function | NADH dehydrogenase (ubiquinone) activity |
| D | 0010181 | molecular_function | FMN binding |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0048038 | molecular_function | quinone binding |
| D | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| D | 1902600 | biological_process | proton transmembrane transport |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | binding site for residue FES A 200 |
| Chain | Residue |
| A | CYS86 |
| A | VAL90 |
| A | CYS91 |
| A | CYS127 |
| A | LEU128 |
| A | ASP129 |
| A | ALA130 |
| A | CYS131 |
| site_id | AC2 |
| Number of Residues | 12 |
| Details | binding site for residue SF4 B 501 |
| Chain | Residue |
| B | PRO199 |
| B | CYS347 |
| B | GLY348 |
| B | GLN349 |
| B | CYS350 |
| B | CYS353 |
| B | SER391 |
| B | ILE392 |
| B | CYS393 |
| B | LEU395 |
| B | GLY396 |
| B | ILE181 |
| site_id | AC3 |
| Number of Residues | 21 |
| Details | binding site for residue FMN B 502 |
| Chain | Residue |
| B | GLY65 |
| B | ARG66 |
| B | GLY67 |
| B | LYS76 |
| B | ASN92 |
| B | ASP94 |
| B | GLU95 |
| B | TYR180 |
| B | GLY183 |
| B | GLU184 |
| B | GLU185 |
| B | VAL218 |
| B | ASN219 |
| B | ASN220 |
| B | THR223 |
| B | NAD503 |
| B | HOH649 |
| B | HOH654 |
| B | HOH685 |
| B | HOH693 |
| B | HOH701 |
| site_id | AC4 |
| Number of Residues | 22 |
| Details | binding site for residue NAD B 503 |
| Chain | Residue |
| B | GLY67 |
| B | GLY68 |
| B | ALA69 |
| B | PHE71 |
| B | LYS76 |
| B | PHE79 |
| B | GLU97 |
| B | TYR180 |
| B | GLU185 |
| B | LYS202 |
| B | TYR205 |
| B | PRO206 |
| B | VAL207 |
| B | FMN502 |
| B | HOH603 |
| B | HOH613 |
| B | HOH638 |
| B | HOH647 |
| B | HOH648 |
| B | HOH653 |
| B | HOH660 |
| B | HOH696 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | binding site for residue NA B 504 |
| Chain | Residue |
| B | ASP94 |
| B | ALA179 |
| B | HOH674 |
| B | HOH708 |
| site_id | AC6 |
| Number of Residues | 8 |
| Details | binding site for residue MPO B 505 |
| Chain | Residue |
| B | TYR34 |
| B | ASP37 |
| B | GLY39 |
| B | PHE229 |
| B | SER232 |
| B | MET233 |
| B | HOH732 |
| B | HOH754 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | binding site for residue FES C 200 |
| Chain | Residue |
| C | CYS86 |
| C | VAL90 |
| C | CYS91 |
| C | CYS127 |
| C | LEU128 |
| C | ASP129 |
| C | ALA130 |
| C | CYS131 |
| site_id | AC8 |
| Number of Residues | 12 |
| Details | binding site for residue SF4 D 501 |
| Chain | Residue |
| D | ILE181 |
| D | PRO199 |
| D | THR346 |
| D | CYS347 |
| D | GLY348 |
| D | GLN349 |
| D | CYS350 |
| D | CYS353 |
| D | SER391 |
| D | ILE392 |
| D | CYS393 |
| D | GLY396 |
| site_id | AC9 |
| Number of Residues | 22 |
| Details | binding site for residue FMN D 502 |
| Chain | Residue |
| D | ASN92 |
| D | ASP94 |
| D | GLU95 |
| D | TYR180 |
| D | GLY183 |
| D | GLU184 |
| D | GLU185 |
| D | VAL218 |
| D | ASN219 |
| D | ASN220 |
| D | THR223 |
| D | GLY394 |
| D | NAD503 |
| D | HOH607 |
| D | HOH640 |
| D | HOH646 |
| D | HOH672 |
| D | HOH700 |
| D | GLY65 |
| D | ARG66 |
| D | GLY67 |
| D | LYS76 |
| site_id | AD1 |
| Number of Residues | 19 |
| Details | binding site for residue NAD D 503 |
| Chain | Residue |
| B | ARG239 |
| D | GLY67 |
| D | GLY68 |
| D | ALA69 |
| D | PHE71 |
| D | LYS76 |
| D | GLU97 |
| D | TYR180 |
| D | GLU185 |
| D | TYR205 |
| D | PRO206 |
| D | FMN502 |
| D | HOH602 |
| D | HOH605 |
| D | HOH622 |
| D | HOH649 |
| D | HOH653 |
| D | HOH655 |
| D | HOH722 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue MPO D 504 |
| Chain | Residue |
| D | TYR34 |
| D | ASP37 |
| D | GLY39 |
| D | PHE229 |
| D | SER232 |
| D | MET233 |
Functional Information from PROSITE/UniProt
| site_id | PS00107 |
| Number of Residues | 24 |
| Details | PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGFGGTGTVIvLteeddive..........AALK |
| Chain | Residue | Details |
| B | LEU314-LYS337 |
| site_id | PS00644 |
| Number of Residues | 16 |
| Details | COMPLEX1_51K_1 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. GAGAYICGEETALIES |
| Chain | Residue | Details |
| B | GLY176-SER191 |
| site_id | PS00645 |
| Number of Residues | 12 |
| Details | COMPLEX1_51K_2 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. ETCGqCtPCRvG |
| Chain | Residue | Details |
| B | GLU345-GLY356 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000250 |
| Chain | Residue | Details |
| B | GLY65 | |
| B | GLY176 | |
| D | GLY65 | |
| D | GLY176 | |
| C | CYS86 | |
| C | CYS91 | |
| C | CYS127 | |
| C | CYS131 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | BINDING: BINDING => ECO:0000255 |
| Chain | Residue | Details |
| B | CYS347 | |
| B | CYS350 | |
| B | CYS353 | |
| B | CYS393 | |
| D | CYS347 | |
| D | CYS350 | |
| D | CYS353 | |
| D | CYS393 |
