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6H8N

Structure of peptidoglycan deacetylase PdaC from Bacillus subtilis - mutant D285S

Functional Information from GO Data
ChainGOidnamespacecontents
A0005975biological_processcarbohydrate metabolic process
A0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
B0005975biological_processcarbohydrate metabolic process
B0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 501
ChainResidue
AASP261
AHIS311
AHIS315
APO4502

site_idAC2
Number of Residues12
Detailsbinding site for residue PO4 A 502
ChainResidue
ALEU400
AHIS402
AZN501
AHOH642
AHOH655
BGLU443
BARG446
AASP261
AHIS311
AHIS315
APRO351
ATYR352

site_idAC3
Number of Residues7
Detailsbinding site for residue PO4 A 503
ChainResidue
ASER322
ALYS324
AGLU325
AHOH611
BASP379
BASN381
BTHR384

site_idAC4
Number of Residues8
Detailsbinding site for residue GOL A 504
ChainResidue
AASP395
AGLY396
AARG397
AHOH602
BASP395
BGLY396
BARG397
BLYS436

site_idAC5
Number of Residues4
Detailsbinding site for residue GOL B 501
ChainResidue
ALEU287
ATYR352
AHOH706
BARG446

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN B 502
ChainResidue
BASP261
BHIS311
BHIS315
BPO4503

site_idAC7
Number of Residues12
Detailsbinding site for residue PO4 B 503
ChainResidue
AGLU443
AARG446
BASP261
BHIS311
BHIS315
BPRO351
BTYR352
BLEU400
BHIS402
BZN502
BHOH624
BHOH643

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues348
DetailsDomain: {"description":"NodB homology","evidences":[{"source":"PROSITE-ProRule","id":"PRU01014","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsActive site: {"description":"Proton donor","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues6
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsSite: {"description":"Raises pKa of active site His","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

248335

PDB entries from 2026-01-28

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