Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6H78

E1 enzyme for ubiquitin like protein activation.

Functional Information from GO Data
ChainGOidnamespacecontents
A0008641molecular_functionubiquitin-like modifier activating enzyme activity
B0008641molecular_functionubiquitin-like modifier activating enzyme activity
C0008641molecular_functionubiquitin-like modifier activating enzyme activity
D0008641molecular_functionubiquitin-like modifier activating enzyme activity
E0008641molecular_functionubiquitin-like modifier activating enzyme activity
F0008641molecular_functionubiquitin-like modifier activating enzyme activity
G0008641molecular_functionubiquitin-like modifier activating enzyme activity
H0008641molecular_functionubiquitin-like modifier activating enzyme activity
I0008641molecular_functionubiquitin-like modifier activating enzyme activity
J0008641molecular_functionubiquitin-like modifier activating enzyme activity
K0008641molecular_functionubiquitin-like modifier activating enzyme activity
L0008641molecular_functionubiquitin-like modifier activating enzyme activity
M0008641molecular_functionubiquitin-like modifier activating enzyme activity
N0008641molecular_functionubiquitin-like modifier activating enzyme activity
O0008641molecular_functionubiquitin-like modifier activating enzyme activity
P0008641molecular_functionubiquitin-like modifier activating enzyme activity
Functional Information from PDB Data
site_idAC1
Number of Residues26
Detailsbinding site for residue ATP A 401
ChainResidue
AGLY80
AASN150
AILE151
ATHR152
ACYS181
AASP183
AASN184
AALA187
AMG402
AMG404
AHOH501
AGLY82
AHOH502
AHOH511
AHOH520
AHOH526
AHOH544
AHOH545
BARG55
AGLY83
AASP104
ATYR105
AASP106
AASN112
AARG115
ALYS127

site_idAC2
Number of Residues3
Detailsbinding site for residue MG A 402
ChainResidue
AASP183
AATP401
AHOH502

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 403
ChainResidue
ACYS226
ACYS229
ACYS303
ACYS308

site_idAC4
Number of Residues6
Detailsbinding site for residue MG A 404
ChainResidue
AASP106
AATP401
AHOH501
AHOH503
AHOH526
AHOH567

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 405
ChainResidue
AASN210
AASP240
AGLU241
ALYS242
ATHR243

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 406
ChainResidue
APRO301
AARG309
AGLN312
AGLU313
ALYS316

site_idAC7
Number of Residues4
Detailsbinding site for residue EDO A 407
ChainResidue
AMET189
AASN192
ATHR193
AASP305

site_idAC8
Number of Residues23
Detailsbinding site for residue ATP B 401
ChainResidue
AARG55
BGLY80
BGLY82
BGLY83
BASP104
BTYR105
BASP106
BASN112
BARG115
BLYS127
BTYR149
BASN150
BILE151
BTHR152
BCYS181
BVAL182
BASP183
BASN184
BMG402
BMG404
BHOH519
BHOH524
BHOH537

site_idAC9
Number of Residues2
Detailsbinding site for residue MG B 402
ChainResidue
BASP183
BATP401

site_idAD1
Number of Residues4
Detailsbinding site for residue ZN B 403
ChainResidue
BCYS226
BCYS229
BCYS303
BCYS308

site_idAD2
Number of Residues4
Detailsbinding site for residue MG B 404
ChainResidue
AHOH539
BASP106
BATP401
BHOH504

site_idAD3
Number of Residues3
Detailsbinding site for residue EDO B 405
ChainResidue
AGLN119
BTHR134
EGLY36

site_idAD4
Number of Residues3
Detailsbinding site for residue EDO B 406
ChainResidue
BPHE272
BLEU273
BASN275

site_idAD5
Number of Residues2
Detailsbinding site for residue EDO B 407
ChainResidue
BTHR152
BPHE157

site_idAD6
Number of Residues2
Detailsbinding site for residue EDO B 408
ChainResidue
BPHE281
BMET295

site_idAD7
Number of Residues1
Detailsbinding site for residue EDO B 409
ChainResidue
BHOH505

site_idAD8
Number of Residues24
Detailsbinding site for residue ATP C 401
ChainResidue
CGLY83
CASP104
CTYR105
CASP106
CASN112
CARG115
CLYS127
CASN150
CILE151
CTHR152
CCYS181
CVAL182
CASP183
CASN184
CALA187
CMET258
CMG402
CMG404
CHOH511
CHOH517
CHOH523
DARG55
CGLY80
CGLY82

site_idAD9
Number of Residues2
Detailsbinding site for residue MG C 402
ChainResidue
CASP183
CATP401

site_idAE1
Number of Residues4
Detailsbinding site for residue ZN C 403
ChainResidue
CCYS226
CCYS229
CCYS303
CCYS308

site_idAE2
Number of Residues5
Detailsbinding site for residue MG C 404
ChainResidue
CASP106
CLYS127
CATP401
CHOH501
CHOH517

site_idAE3
Number of Residues4
Detailsbinding site for residue EDO C 405
ChainResidue
CSER213
CGLY214
CHIS215
CVAL235

site_idAE4
Number of Residues23
Detailsbinding site for residue ATP D 401
ChainResidue
CARG55
DGLY80
DGLY82
DGLY83
DASP104
DTYR105
DASP106
DASN112
DARG115
DLYS127
DTYR149
DASN150
DILE151
DASP183
DASN184
DMG402
DMG404
DEDO405
DHOH502
DHOH503
DHOH509
DHOH510
DHOH515

site_idAE5
Number of Residues3
Detailsbinding site for residue MG D 402
ChainResidue
DASP183
DATP401
DHOH503

site_idAE6
Number of Residues4
Detailsbinding site for residue ZN D 403
ChainResidue
DCYS226
DCYS229
DCYS303
DCYS308

site_idAE7
Number of Residues4
Detailsbinding site for residue MG D 404
ChainResidue
DASP106
DATP401
DHOH511
DHOH537

site_idAE8
Number of Residues6
Detailsbinding site for residue EDO D 405
ChainResidue
DGLY83
DVAL84
DCYS181
DASP183
DATP401
DHOH506

site_idAE9
Number of Residues1
Detailsbinding site for residue EDO D 406
ChainResidue
DGLN129

site_idAF1
Number of Residues3
Detailsbinding site for residue EDO D 407
ChainResidue
DHIS121
DHIS133
DTHR134

site_idAF2
Number of Residues22
Detailsbinding site for residue ATP E 401
ChainResidue
EGLY80
EGLY82
EGLY83
EASP104
ETYR105
EASP106
EASN112
EARG115
ELYS127
EASN150
EILE151
ETHR152
ECYS181
EASP183
EASN184
EMG402
EMG404
EHOH501
EHOH502
EHOH516
EHOH536
FARG55

site_idAF3
Number of Residues2
Detailsbinding site for residue MG E 402
ChainResidue
EASP183
EATP401

site_idAF4
Number of Residues4
Detailsbinding site for residue ZN E 403
ChainResidue
ECYS226
ECYS229
ECYS303
ECYS308

site_idAF5
Number of Residues4
Detailsbinding site for residue MG E 404
ChainResidue
EASP106
EATP401
EHOH501
EHOH540

site_idAF6
Number of Residues3
Detailsbinding site for residue EDO E 405
ChainResidue
EGLU223
ESER296
EMET297

site_idAF7
Number of Residues3
Detailsbinding site for residue EDO E 406
ChainResidue
EPRO301
EARG309
EGLN312

site_idAF8
Number of Residues27
Detailsbinding site for residue ATP F 401
ChainResidue
EARG55
FGLY80
FGLY82
FGLY83
FASP104
FTYR105
FASP106
FASN112
FARG115
FLYS127
FTYR149
FASN150
FILE151
FTHR152
FASP183
FASN184
FALA187
FMET258
FMG402
FMG404
FHOH502
FHOH507
FHOH520
FHOH524
FHOH531
FHOH534
FHOH536

site_idAF9
Number of Residues3
Detailsbinding site for residue MG F 402
ChainResidue
FASP183
FATP401
FHOH502

site_idAG1
Number of Residues4
Detailsbinding site for residue ZN F 403
ChainResidue
FCYS226
FCYS229
FCYS303
FCYS308

site_idAG2
Number of Residues4
Detailsbinding site for residue MG F 404
ChainResidue
FASP106
FATP401
FHOH507
FHOH536

site_idAG3
Number of Residues3
Detailsbinding site for residue EDO F 405
ChainResidue
AGLY36
FASN137
FHOH526

site_idAG4
Number of Residues4
Detailsbinding site for residue EDO F 406
ChainResidue
FGLY284
FTYR285
FASN286
FPRO293

site_idAG5
Number of Residues2
Detailsbinding site for residue EDO F 407
ChainResidue
FGLU223
FMET297

site_idAG6
Number of Residues23
Detailsbinding site for residue ATP G 401
ChainResidue
GGLY80
GGLY82
GGLY83
GASP104
GTYR105
GASP106
GASN112
GARG115
GLYS127
GTYR149
GASN150
GILE151
GTHR152
GCYS181
GVAL182
GASP183
GASN184
GMG402
GMG404
GHOH503
GHOH514
GHOH520
HARG55

site_idAG7
Number of Residues3
Detailsbinding site for residue MG G 402
ChainResidue
GASP183
GATP401
GHOH503

site_idAG8
Number of Residues4
Detailsbinding site for residue ZN G 403
ChainResidue
GCYS226
GCYS229
GCYS303
GCYS308

site_idAG9
Number of Residues4
Detailsbinding site for residue MG G 404
ChainResidue
GASP106
GLYS127
GATP401
GHOH550

site_idAH1
Number of Residues3
Detailsbinding site for residue EDO G 405
ChainResidue
GASN196
GGLU197
GASN307

site_idAH2
Number of Residues6
Detailsbinding site for residue EDO G 406
ChainResidue
GVAL175
GASP176
GGLY199
GGLN200
GEDO407
GHOH502

site_idAH3
Number of Residues3
Detailsbinding site for residue EDO G 407
ChainResidue
GLEU198
GGLY199
GEDO406

site_idAH4
Number of Residues27
Detailsbinding site for residue ATP H 401
ChainResidue
GARG55
HGLY80
HGLY82
HGLY83
HASP104
HTYR105
HASP106
HASN112
HARG115
HLYS127
HASN150
HILE151
HTHR152
HCYS181
HVAL182
HASP183
HASN184
HALA187
HMG402
HMG404
HHOH510
HHOH511
HHOH520
HHOH521
HHOH525
HHOH535
HHOH537

site_idAH5
Number of Residues2
Detailsbinding site for residue MG H 402
ChainResidue
HASP183
HATP401

site_idAH6
Number of Residues4
Detailsbinding site for residue ZN H 403
ChainResidue
HCYS226
HCYS229
HCYS303
HCYS308

site_idAH7
Number of Residues5
Detailsbinding site for residue MG H 404
ChainResidue
HASP106
HATP401
HHOH511
HHOH521
HHOH525

site_idAH8
Number of Residues4
Detailsbinding site for residue EDO H 405
ChainResidue
GGLU90
GPHE117
HPHE117
HGLN119

site_idAH9
Number of Residues26
Detailsbinding site for residue ATP I 400
ChainResidue
IGLY80
IGLY82
IGLY83
IASP104
ITYR105
IASP106
IASN112
IARG115
ILYS127
ITYR149
IASN150
IILE151
ITHR152
ICYS181
IASP183
IASN184
IMG401
IMG403
IHOH505
IHOH520
IHOH521
IHOH528
IHOH530
IHOH540
IHOH541
JARG55

site_idAI1
Number of Residues3
Detailsbinding site for residue MG I 401
ChainResidue
IASP183
IATP400
IHOH546

site_idAI2
Number of Residues4
Detailsbinding site for residue ZN I 402
ChainResidue
ICYS226
ICYS229
ICYS303
ICYS308

site_idAI3
Number of Residues6
Detailsbinding site for residue MG I 403
ChainResidue
IASP106
IATP400
IHOH501
IHOH504
IHOH505
IHOH540

site_idAI4
Number of Residues23
Detailsbinding site for residue ATP J 401
ChainResidue
IARG55
JGLY80
JGLY82
JGLY83
JASP104
JTYR105
JASP106
JARG115
JLYS127
JASN150
JILE151
JCYS181
JVAL182
JASP183
JASN184
JMG402
JMG404
JHOH503
JHOH505
JHOH516
JHOH529
JHOH531
JHOH540

site_idAI5
Number of Residues3
Detailsbinding site for residue MG J 402
ChainResidue
JASP183
JATP401
JHOH529

site_idAI6
Number of Residues4
Detailsbinding site for residue ZN J 403
ChainResidue
JCYS226
JCYS229
JCYS303
JCYS308

site_idAI7
Number of Residues6
Detailsbinding site for residue MG J 404
ChainResidue
JASP106
JLYS127
JATP401
JHOH505
JHOH506
JHOH531

site_idAI8
Number of Residues7
Detailsbinding site for residue EDO J 405
ChainResidue
DHIS121
JHIS121
JGLN122
JHIS133
JTHR134
JHOH513
JHOH543

site_idAI9
Number of Residues6
Detailsbinding site for residue EDO J 406
ChainResidue
IGLU90
IPHE117
IGLN119
JGLU90
JPHE117
JGLN119

site_idAJ1
Number of Residues1
Detailsbinding site for residue EDO J 407
ChainResidue
JTYR105

site_idAJ2
Number of Residues2
Detailsbinding site for residue EDO J 408
ChainResidue
JPHE272
JASN275

site_idAJ3
Number of Residues3
Detailsbinding site for residue EDO J 409
ChainResidue
JPRO301
JARG309
JLYS316

site_idAJ4
Number of Residues5
Detailsbinding site for residue EDO J 410
ChainResidue
JVAL279
JSER280
JPHE281
JTHR294
JMET295

site_idAJ5
Number of Residues24
Detailsbinding site for residue ATP K 401
ChainResidue
KGLY80
KGLY82
KGLY83
KASP104
KTYR105
KASP106
KASN112
KARG115
KLYS127
KASN150
KILE151
KTHR152
KCYS181
KVAL182
KASP183
KASN184
KALA187
KMG402
KMG404
KHOH501
KHOH516
KHOH533
KHOH535
LARG55

site_idAJ6
Number of Residues3
Detailsbinding site for residue MG K 402
ChainResidue
KASP183
KATP401
KHOH501

site_idAJ7
Number of Residues4
Detailsbinding site for residue ZN K 403
ChainResidue
KCYS226
KCYS229
KCYS303
KCYS308

site_idAJ8
Number of Residues6
Detailsbinding site for residue MG K 404
ChainResidue
KASP106
KATP401
KHOH508
KHOH509
KHOH540
KHOH544

site_idAJ9
Number of Residues3
Detailsbinding site for residue EDO K 405
ChainResidue
KPRO301
KGLU313
KLYS316

site_idAK1
Number of Residues1
Detailsbinding site for residue CL K 407
ChainResidue
KASN156

site_idAK2
Number of Residues22
Detailsbinding site for residue ATP L 401
ChainResidue
KARG55
LGLY80
LGLY82
LGLY83
LASP104
LTYR105
LASP106
LASN112
LARG115
LLYS127
LASN150
LILE151
LCYS181
LVAL182
LASP183
LASN184
LALA187
LMG402
LMG404
LHOH501
LHOH502
LHOH539

site_idAK3
Number of Residues3
Detailsbinding site for residue MG L 402
ChainResidue
LASP183
LATP401
LHOH501

site_idAK4
Number of Residues4
Detailsbinding site for residue ZN L 403
ChainResidue
LCYS226
LCYS229
LCYS303
LCYS308

site_idAK5
Number of Residues5
Detailsbinding site for residue MG L 404
ChainResidue
LASP106
LLYS127
LATP401
LHOH520
LHOH537

site_idAK6
Number of Residues3
Detailsbinding site for residue EDO L 405
ChainResidue
LGLN129
LHOH509
PARG136

site_idAK7
Number of Residues2
Detailsbinding site for residue EDO L 406
ChainResidue
LASN196
LGLU197

site_idAK8
Number of Residues5
Detailsbinding site for residue EDO L 407
ChainResidue
LPRO174
LVAL175
LASP176
LHOH505
LHOH538

site_idAK9
Number of Residues21
Detailsbinding site for residue ATP M 401
ChainResidue
MGLY80
MGLY82
MGLY83
MASP104
MTYR105
MASP106
MASN112
MARG115
MLYS127
MASN150
MILE151
MCYS181
MVAL182
MASP183
MASN184
MMET258
MMG402
MMG404
MHOH501
MHOH526
NARG55

site_idAL1
Number of Residues3
Detailsbinding site for residue MG M 402
ChainResidue
MASP183
MATP401
MHOH501

site_idAL2
Number of Residues4
Detailsbinding site for residue ZN M 403
ChainResidue
MCYS226
MCYS229
MCYS303
MCYS308

site_idAL3
Number of Residues4
Detailsbinding site for residue MG M 404
ChainResidue
MASP106
MATP401
MHOH533
MHOH537

site_idAL4
Number of Residues1
Detailsbinding site for residue EDO M 405
ChainResidue
MASN148

site_idAL5
Number of Residues2
Detailsbinding site for residue EDO M 406
ChainResidue
MSER296
MMET297

site_idAL6
Number of Residues25
Detailsbinding site for residue ATP N 401
ChainResidue
MARG55
NGLY80
NGLY82
NGLY83
NASP104
NTYR105
NASP106
NASN112
NARG115
NLYS127
NASN150
NILE151
NTHR152
NCYS181
NVAL182
NASP183
NASN184
NMG402
NMG404
NHOH506
NHOH511
NHOH516
NHOH517
NHOH519
NHOH524

site_idAL7
Number of Residues2
Detailsbinding site for residue MG N 402
ChainResidue
NASP183
NATP401

site_idAL8
Number of Residues4
Detailsbinding site for residue ZN N 403
ChainResidue
NCYS226
NCYS229
NCYS303
NCYS308

site_idAL9
Number of Residues6
Detailsbinding site for residue MG N 404
ChainResidue
NASP106
NATP401
NHOH511
NHOH517
NHOH523
NHOH526

site_idAM1
Number of Residues2
Detailsbinding site for residue EDO N 405
ChainResidue
NGLU155
NHIS159

site_idAM2
Number of Residues26
Detailsbinding site for residue ATP O 401
ChainResidue
OGLY80
OGLY82
OGLY83
OASP104
OTYR105
OASP106
OASN112
OARG115
OLYS127
OTYR149
OASN150
OILE151
OTHR152
OCYS181
OVAL182
OASP183
OASN184
OALA187
OMG402
OMG404
OHOH517
OHOH520
OHOH524
OHOH526
OHOH528
PARG55

site_idAM3
Number of Residues2
Detailsbinding site for residue MG O 402
ChainResidue
OASP183
OATP401

site_idAM4
Number of Residues4
Detailsbinding site for residue ZN O 403
ChainResidue
OCYS226
OCYS229
OCYS303
OCYS308

site_idAM5
Number of Residues6
Detailsbinding site for residue MG O 404
ChainResidue
OASP106
OATP401
OHOH519
OHOH520
OHOH524
OHOH526

site_idAM6
Number of Residues4
Detailsbinding site for residue EDO O 405
ChainResidue
OPHE117
OGLN119
PGLU90
PPHE117

site_idAM7
Number of Residues3
Detailsbinding site for residue EDO O 406
ChainResidue
OGLU223
OMET297
OLYS298

site_idAM8
Number of Residues2
Detailsbinding site for residue EDO O 407
ChainResidue
OGLU155
OASN156

site_idAM9
Number of Residues27
Detailsbinding site for residue ATP P 401
ChainResidue
OARG55
PGLY80
PGLY82
PGLY83
PASP104
PTYR105
PASP106
PASN112
PARG115
PLYS127
PTYR149
PASN150
PILE151
PTHR152
PCYS181
PVAL182
PASP183
PASN184
PALA187
PMG402
PMG404
PEDO405
PHOH504
PHOH509
PHOH511
PHOH516
PHOH517

site_idAN1
Number of Residues2
Detailsbinding site for residue MG P 402
ChainResidue
PASP183
PATP401

site_idAN2
Number of Residues4
Detailsbinding site for residue ZN P 403
ChainResidue
PCYS226
PCYS229
PCYS303
PCYS308

site_idAN3
Number of Residues5
Detailsbinding site for residue MG P 404
ChainResidue
PASP106
PLYS127
PATP401
PHOH516
PHOH527

site_idAN4
Number of Residues2
Detailsbinding site for residue EDO P 405
ChainResidue
PALA251
PATP401

site_idAN5
Number of Residues3
Detailsbinding site for residue EDO P 406
ChainResidue
PSER213
PHIS215
PVAL235

site_idAN6
Number of Residues2
Detailsbinding site for residue EDO P 407
ChainResidue
PGLU223
PMET297

site_idAN7
Number of Residues5
Detailsbinding site for residue EDO P 408
ChainResidue
BPHE291
PASN286
PGLN289
PPHE291
PHOH521

Functional Information from PROSITE/UniProt
site_idPS00065
Number of Residues29
DetailsD_2_HYDROXYACID_DH_1 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. VAIVGvGGVGsvtaemltrcgigkLLlFD
ChainResidueDetails
AVAL76-ASP104

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsActive site: {"description":"Glycyl thioester intermediate","evidences":[{"source":"PubMed","id":"20368332","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27545674","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27653677","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34588452","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues64
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20368332","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27653677","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30412706","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5L95","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6H77","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6H78","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues16
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20368332","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27653677","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30412706","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5L95","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6H78","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues64
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20368332","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27653677","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30412706","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5IAA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5L95","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6H77","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6H78","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues16
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19690332","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

PDB statisticsPDBj update infoContact PDBjnumon