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6H6T

Binary crystal structure of positively and negatively supercharged variants Ftn(pos) and Ftn(neg) from human heavy chain ferritin (propandiol condition, coordination number 8)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004322molecular_functionferroxidase activity
A0005506molecular_functioniron ion binding
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005764cellular_componentlysosome
A0005776cellular_componentautophagosome
A0005829cellular_componentcytosol
A0006826biological_processiron ion transport
A0006879biological_processintracellular iron ion homeostasis
A0006880biological_processintracellular sequestering of iron ion
A0006955biological_processimmune response
A0008198molecular_functionferrous iron binding
A0008199molecular_functionferric iron binding
A0008285biological_processnegative regulation of cell population proliferation
A0016020cellular_componentmembrane
A0016491molecular_functionoxidoreductase activity
A0031410cellular_componentcytoplasmic vesicle
A0042802molecular_functionidentical protein binding
A0044754cellular_componentautolysosome
A0046872molecular_functionmetal ion binding
A0048147biological_processnegative regulation of fibroblast proliferation
A0070062cellular_componentextracellular exosome
A0070288cellular_componentferritin complex
A0110076biological_processnegative regulation of ferroptosis
A0140315molecular_functioniron ion sequestering activity
A1904724cellular_componenttertiary granule lumen
A1904813cellular_componentficolin-1-rich granule lumen
B0004322molecular_functionferroxidase activity
B0005506molecular_functioniron ion binding
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005764cellular_componentlysosome
B0005776cellular_componentautophagosome
B0005829cellular_componentcytosol
B0006826biological_processiron ion transport
B0006879biological_processintracellular iron ion homeostasis
B0006880biological_processintracellular sequestering of iron ion
B0006955biological_processimmune response
B0008198molecular_functionferrous iron binding
B0008199molecular_functionferric iron binding
B0008285biological_processnegative regulation of cell population proliferation
B0016020cellular_componentmembrane
B0016491molecular_functionoxidoreductase activity
B0031410cellular_componentcytoplasmic vesicle
B0042802molecular_functionidentical protein binding
B0044754cellular_componentautolysosome
B0046872molecular_functionmetal ion binding
B0048147biological_processnegative regulation of fibroblast proliferation
B0070062cellular_componentextracellular exosome
B0070288cellular_componentferritin complex
B0110076biological_processnegative regulation of ferroptosis
B0140315molecular_functioniron ion sequestering activity
B1904724cellular_componenttertiary granule lumen
B1904813cellular_componentficolin-1-rich granule lumen
C0004322molecular_functionferroxidase activity
C0005506molecular_functioniron ion binding
C0005515molecular_functionprotein binding
C0005576cellular_componentextracellular region
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005764cellular_componentlysosome
C0005776cellular_componentautophagosome
C0005829cellular_componentcytosol
C0006826biological_processiron ion transport
C0006879biological_processintracellular iron ion homeostasis
C0006880biological_processintracellular sequestering of iron ion
C0006955biological_processimmune response
C0008198molecular_functionferrous iron binding
C0008199molecular_functionferric iron binding
C0008285biological_processnegative regulation of cell population proliferation
C0016020cellular_componentmembrane
C0016491molecular_functionoxidoreductase activity
C0031410cellular_componentcytoplasmic vesicle
C0042802molecular_functionidentical protein binding
C0044754cellular_componentautolysosome
C0046872molecular_functionmetal ion binding
C0048147biological_processnegative regulation of fibroblast proliferation
C0070062cellular_componentextracellular exosome
C0070288cellular_componentferritin complex
C0110076biological_processnegative regulation of ferroptosis
C0140315molecular_functioniron ion sequestering activity
C1904724cellular_componenttertiary granule lumen
C1904813cellular_componentficolin-1-rich granule lumen
D0004322molecular_functionferroxidase activity
D0005506molecular_functioniron ion binding
D0005515molecular_functionprotein binding
D0005576cellular_componentextracellular region
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0005764cellular_componentlysosome
D0005776cellular_componentautophagosome
D0005829cellular_componentcytosol
D0006826biological_processiron ion transport
D0006879biological_processintracellular iron ion homeostasis
D0006880biological_processintracellular sequestering of iron ion
D0006955biological_processimmune response
D0008198molecular_functionferrous iron binding
D0008199molecular_functionferric iron binding
D0008285biological_processnegative regulation of cell population proliferation
D0016020cellular_componentmembrane
D0016491molecular_functionoxidoreductase activity
D0031410cellular_componentcytoplasmic vesicle
D0042802molecular_functionidentical protein binding
D0044754cellular_componentautolysosome
D0046872molecular_functionmetal ion binding
D0048147biological_processnegative regulation of fibroblast proliferation
D0070062cellular_componentextracellular exosome
D0070288cellular_componentferritin complex
D0110076biological_processnegative regulation of ferroptosis
D0140315molecular_functioniron ion sequestering activity
D1904724cellular_componenttertiary granule lumen
D1904813cellular_componentficolin-1-rich granule lumen
E0004322molecular_functionferroxidase activity
E0005506molecular_functioniron ion binding
E0005515molecular_functionprotein binding
E0005576cellular_componentextracellular region
E0005634cellular_componentnucleus
E0005737cellular_componentcytoplasm
E0005764cellular_componentlysosome
E0005776cellular_componentautophagosome
E0005829cellular_componentcytosol
E0006826biological_processiron ion transport
E0006879biological_processintracellular iron ion homeostasis
E0006880biological_processintracellular sequestering of iron ion
E0006955biological_processimmune response
E0008198molecular_functionferrous iron binding
E0008199molecular_functionferric iron binding
E0008285biological_processnegative regulation of cell population proliferation
E0016020cellular_componentmembrane
E0016491molecular_functionoxidoreductase activity
E0031410cellular_componentcytoplasmic vesicle
E0042802molecular_functionidentical protein binding
E0044754cellular_componentautolysosome
E0046872molecular_functionmetal ion binding
E0048147biological_processnegative regulation of fibroblast proliferation
E0070062cellular_componentextracellular exosome
E0070288cellular_componentferritin complex
E0110076biological_processnegative regulation of ferroptosis
E0140315molecular_functioniron ion sequestering activity
E1904724cellular_componenttertiary granule lumen
E1904813cellular_componentficolin-1-rich granule lumen
F0004322molecular_functionferroxidase activity
F0005506molecular_functioniron ion binding
F0005515molecular_functionprotein binding
F0005576cellular_componentextracellular region
F0005634cellular_componentnucleus
F0005737cellular_componentcytoplasm
F0005764cellular_componentlysosome
F0005776cellular_componentautophagosome
F0005829cellular_componentcytosol
F0006826biological_processiron ion transport
F0006879biological_processintracellular iron ion homeostasis
F0006880biological_processintracellular sequestering of iron ion
F0006955biological_processimmune response
F0008198molecular_functionferrous iron binding
F0008199molecular_functionferric iron binding
F0008285biological_processnegative regulation of cell population proliferation
F0016020cellular_componentmembrane
F0016491molecular_functionoxidoreductase activity
F0031410cellular_componentcytoplasmic vesicle
F0042802molecular_functionidentical protein binding
F0044754cellular_componentautolysosome
F0046872molecular_functionmetal ion binding
F0048147biological_processnegative regulation of fibroblast proliferation
F0070062cellular_componentextracellular exosome
F0070288cellular_componentferritin complex
F0110076biological_processnegative regulation of ferroptosis
F0140315molecular_functioniron ion sequestering activity
F1904724cellular_componenttertiary granule lumen
F1904813cellular_componentficolin-1-rich granule lumen
G0004322molecular_functionferroxidase activity
G0005506molecular_functioniron ion binding
G0005515molecular_functionprotein binding
G0005576cellular_componentextracellular region
G0005634cellular_componentnucleus
G0005737cellular_componentcytoplasm
G0005764cellular_componentlysosome
G0005776cellular_componentautophagosome
G0005829cellular_componentcytosol
G0006826biological_processiron ion transport
G0006879biological_processintracellular iron ion homeostasis
G0006880biological_processintracellular sequestering of iron ion
G0006955biological_processimmune response
G0008198molecular_functionferrous iron binding
G0008199molecular_functionferric iron binding
G0008285biological_processnegative regulation of cell population proliferation
G0016020cellular_componentmembrane
G0016491molecular_functionoxidoreductase activity
G0031410cellular_componentcytoplasmic vesicle
G0042802molecular_functionidentical protein binding
G0044754cellular_componentautolysosome
G0046872molecular_functionmetal ion binding
G0048147biological_processnegative regulation of fibroblast proliferation
G0070062cellular_componentextracellular exosome
G0070288cellular_componentferritin complex
G0110076biological_processnegative regulation of ferroptosis
G0140315molecular_functioniron ion sequestering activity
G1904724cellular_componenttertiary granule lumen
G1904813cellular_componentficolin-1-rich granule lumen
H0004322molecular_functionferroxidase activity
H0005506molecular_functioniron ion binding
H0005515molecular_functionprotein binding
H0005576cellular_componentextracellular region
H0005634cellular_componentnucleus
H0005737cellular_componentcytoplasm
H0005764cellular_componentlysosome
H0005776cellular_componentautophagosome
H0005829cellular_componentcytosol
H0006826biological_processiron ion transport
H0006879biological_processintracellular iron ion homeostasis
H0006880biological_processintracellular sequestering of iron ion
H0006955biological_processimmune response
H0008198molecular_functionferrous iron binding
H0008199molecular_functionferric iron binding
H0008285biological_processnegative regulation of cell population proliferation
H0016020cellular_componentmembrane
H0016491molecular_functionoxidoreductase activity
H0031410cellular_componentcytoplasmic vesicle
H0042802molecular_functionidentical protein binding
H0044754cellular_componentautolysosome
H0046872molecular_functionmetal ion binding
H0048147biological_processnegative regulation of fibroblast proliferation
H0070062cellular_componentextracellular exosome
H0070288cellular_componentferritin complex
H0110076biological_processnegative regulation of ferroptosis
H0140315molecular_functioniron ion sequestering activity
H1904724cellular_componenttertiary granule lumen
H1904813cellular_componentficolin-1-rich granule lumen
I0004322molecular_functionferroxidase activity
I0005506molecular_functioniron ion binding
I0005515molecular_functionprotein binding
I0005576cellular_componentextracellular region
I0005634cellular_componentnucleus
I0005737cellular_componentcytoplasm
I0005764cellular_componentlysosome
I0005776cellular_componentautophagosome
I0005829cellular_componentcytosol
I0006826biological_processiron ion transport
I0006879biological_processintracellular iron ion homeostasis
I0006880biological_processintracellular sequestering of iron ion
I0006955biological_processimmune response
I0008198molecular_functionferrous iron binding
I0008199molecular_functionferric iron binding
I0008285biological_processnegative regulation of cell population proliferation
I0016020cellular_componentmembrane
I0016491molecular_functionoxidoreductase activity
I0031410cellular_componentcytoplasmic vesicle
I0042802molecular_functionidentical protein binding
I0044754cellular_componentautolysosome
I0046872molecular_functionmetal ion binding
I0048147biological_processnegative regulation of fibroblast proliferation
I0070062cellular_componentextracellular exosome
I0070288cellular_componentferritin complex
I0110076biological_processnegative regulation of ferroptosis
I0140315molecular_functioniron ion sequestering activity
I1904724cellular_componenttertiary granule lumen
I1904813cellular_componentficolin-1-rich granule lumen
J0004322molecular_functionferroxidase activity
J0005506molecular_functioniron ion binding
J0005515molecular_functionprotein binding
J0005576cellular_componentextracellular region
J0005634cellular_componentnucleus
J0005737cellular_componentcytoplasm
J0005764cellular_componentlysosome
J0005776cellular_componentautophagosome
J0005829cellular_componentcytosol
J0006826biological_processiron ion transport
J0006879biological_processintracellular iron ion homeostasis
J0006880biological_processintracellular sequestering of iron ion
J0006955biological_processimmune response
J0008198molecular_functionferrous iron binding
J0008199molecular_functionferric iron binding
J0008285biological_processnegative regulation of cell population proliferation
J0016020cellular_componentmembrane
J0016491molecular_functionoxidoreductase activity
J0031410cellular_componentcytoplasmic vesicle
J0042802molecular_functionidentical protein binding
J0044754cellular_componentautolysosome
J0046872molecular_functionmetal ion binding
J0048147biological_processnegative regulation of fibroblast proliferation
J0070062cellular_componentextracellular exosome
J0070288cellular_componentferritin complex
J0110076biological_processnegative regulation of ferroptosis
J0140315molecular_functioniron ion sequestering activity
J1904724cellular_componenttertiary granule lumen
J1904813cellular_componentficolin-1-rich granule lumen
K0004322molecular_functionferroxidase activity
K0005506molecular_functioniron ion binding
K0005515molecular_functionprotein binding
K0005576cellular_componentextracellular region
K0005634cellular_componentnucleus
K0005737cellular_componentcytoplasm
K0005764cellular_componentlysosome
K0005776cellular_componentautophagosome
K0005829cellular_componentcytosol
K0006826biological_processiron ion transport
K0006879biological_processintracellular iron ion homeostasis
K0006880biological_processintracellular sequestering of iron ion
K0006955biological_processimmune response
K0008198molecular_functionferrous iron binding
K0008199molecular_functionferric iron binding
K0008285biological_processnegative regulation of cell population proliferation
K0016020cellular_componentmembrane
K0016491molecular_functionoxidoreductase activity
K0031410cellular_componentcytoplasmic vesicle
K0042802molecular_functionidentical protein binding
K0044754cellular_componentautolysosome
K0046872molecular_functionmetal ion binding
K0048147biological_processnegative regulation of fibroblast proliferation
K0070062cellular_componentextracellular exosome
K0070288cellular_componentferritin complex
K0110076biological_processnegative regulation of ferroptosis
K0140315molecular_functioniron ion sequestering activity
K1904724cellular_componenttertiary granule lumen
K1904813cellular_componentficolin-1-rich granule lumen
L0004322molecular_functionferroxidase activity
L0005506molecular_functioniron ion binding
L0005515molecular_functionprotein binding
L0005576cellular_componentextracellular region
L0005634cellular_componentnucleus
L0005737cellular_componentcytoplasm
L0005764cellular_componentlysosome
L0005776cellular_componentautophagosome
L0005829cellular_componentcytosol
L0006826biological_processiron ion transport
L0006879biological_processintracellular iron ion homeostasis
L0006880biological_processintracellular sequestering of iron ion
L0006955biological_processimmune response
L0008198molecular_functionferrous iron binding
L0008199molecular_functionferric iron binding
L0008285biological_processnegative regulation of cell population proliferation
L0016020cellular_componentmembrane
L0016491molecular_functionoxidoreductase activity
L0031410cellular_componentcytoplasmic vesicle
L0042802molecular_functionidentical protein binding
L0044754cellular_componentautolysosome
L0046872molecular_functionmetal ion binding
L0048147biological_processnegative regulation of fibroblast proliferation
L0070062cellular_componentextracellular exosome
L0070288cellular_componentferritin complex
L0110076biological_processnegative regulation of ferroptosis
L0140315molecular_functioniron ion sequestering activity
L1904724cellular_componenttertiary granule lumen
L1904813cellular_componentficolin-1-rich granule lumen
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue FE A 201
ChainResidue
AGLU27
AGLU62
AHIS65
AGLN141

site_idAC2
Number of Residues3
Detailsbinding site for residue ACT A 202
ChainResidue
AARG25
AASP84
AGLN86

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 203
ChainResidue
DGLU134
FASP131
FGLU134
AASP131
AGLU134

site_idAC4
Number of Residues4
Detailsbinding site for residue FE B 201
ChainResidue
BGLU27
BGLU62
BHIS65
BGLN141

site_idAC5
Number of Residues5
Detailsbinding site for residue MG B 202
ChainResidue
BASP131
BGLU134
CGLU134
EASP131
EGLU134

site_idAC6
Number of Residues5
Detailsbinding site for residue ZN C 201
ChainResidue
AHIS173
BHIS173
CHIS173
CCL203
DHIS173

site_idAC7
Number of Residues4
Detailsbinding site for residue FE C 202
ChainResidue
CGLU27
CGLU62
CHIS65
CGLN141

site_idAC8
Number of Residues5
Detailsbinding site for residue CL C 203
ChainResidue
AHIS173
BHIS173
CHIS173
CZN201
DHIS173

site_idAC9
Number of Residues4
Detailsbinding site for residue FE D 201
ChainResidue
DGLU27
DGLU62
DHIS65
DGLN141

site_idAD1
Number of Residues8
Detailsbinding site for residue ZN E 201
ChainResidue
EHIS173
EHIS173
EHIS173
EHIS173
ECL203
ECL203
ECL203
ECL203

site_idAD2
Number of Residues4
Detailsbinding site for residue FE E 202
ChainResidue
EGLU27
EGLU62
EHIS65
EGLN141

site_idAD3
Number of Residues8
Detailsbinding site for residue CL E 203
ChainResidue
EHIS173
EHIS173
EHIS173
EHIS173
EZN201
EZN201
EZN201
EZN201

site_idAD4
Number of Residues8
Detailsbinding site for residue ZN F 201
ChainResidue
FHIS173
FHIS173
FHIS173
FHIS173
FCL203
FCL203
FCL203
FCL203

site_idAD5
Number of Residues3
Detailsbinding site for residue FE F 202
ChainResidue
FGLU27
FGLU62
FHIS65

site_idAD6
Number of Residues8
Detailsbinding site for residue CL F 203
ChainResidue
FHIS173
FHIS173
FHIS173
FHIS173
FZN201
FZN201
FZN201
FZN201

site_idAD7
Number of Residues4
Detailsbinding site for residue FE G 201
ChainResidue
GGLU27
GGLU62
GHIS65
GGLN141

site_idAD8
Number of Residues4
Detailsbinding site for residue ACT G 202
ChainResidue
EHIS13
GASP89
GGLU102
GGLU105

site_idAD9
Number of Residues5
Detailsbinding site for residue CL G 203
ChainResidue
GHIS173
HHIS173
IHIS173
KHIS173
KZN201

site_idAE1
Number of Residues4
Detailsbinding site for residue FE H 201
ChainResidue
HGLU27
HGLU62
HHIS65
HGLN141

site_idAE2
Number of Residues4
Detailsbinding site for residue FE I 201
ChainResidue
IGLU27
IGLU62
IHIS65
IGLN141

site_idAE3
Number of Residues8
Detailsbinding site for residue ZN J 201
ChainResidue
JHIS173
JHIS173
JHIS173
JHIS173
JCL203
JCL203
JCL203
JCL203

site_idAE4
Number of Residues4
Detailsbinding site for residue FE J 202
ChainResidue
JGLU27
JGLU62
JHIS65
JGLN141

site_idAE5
Number of Residues8
Detailsbinding site for residue CL J 203
ChainResidue
JHIS173
JHIS173
JHIS173
JHIS173
JZN201
JZN201
JZN201
JZN201

site_idAE6
Number of Residues6
Detailsbinding site for residue ZN K 201
ChainResidue
GHIS173
GCL203
HHIS173
IHIS173
KHIS173
KHOH329

site_idAE7
Number of Residues4
Detailsbinding site for residue FE K 202
ChainResidue
KGLU27
KGLU62
KHIS65
KGLN141

site_idAE8
Number of Residues8
Detailsbinding site for residue ZN L 201
ChainResidue
LHIS173
LHIS173
LHIS173
LHIS173
LCL203
LCL203
LCL203
LCL203

site_idAE9
Number of Residues4
Detailsbinding site for residue FE L 202
ChainResidue
LGLU27
LGLU62
LHIS65
LGLN141

site_idAF1
Number of Residues9
Detailsbinding site for residue CL L 203
ChainResidue
LLEU169
LHIS173
LHIS173
LHIS173
LHIS173
LZN201
LZN201
LZN201
LZN201

Functional Information from PROSITE/UniProt
site_idPS00204
Number of Residues21
DetailsFERRITIN_2 Ferritin iron-binding regions signature 2. DphLCDFIEthYLneqvkaIK
ChainResidueDetails
GASP126-LYS146
AASP126-LYS146

site_idPS00540
Number of Residues19
DetailsFERRITIN_1 Ferritin iron-binding regions signature 1. EeREhaEKLMklQNqRgGR
ChainResidueDetails
GGLU61-ARG79
AGLU61-ARG79

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:1992356, ECO:0007744|PDB:1FHA
ChainResidueDetails
GGLU27
KHIS65
LGLU27
LHIS65
GHIS65
HGLU27
HHIS65
IGLU27
IHIS65
JGLU27
JHIS65
KGLU27

site_idSWS_FT_FI2
Number of Residues18
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00085
ChainResidueDetails
GGLU62
JGLU62
JGLU107
JGLN141
KGLU62
KGLU107
KGLN141
LGLU62
LGLU107
LGLN141
GGLU107
GGLN141
HGLU62
HGLU107
HGLN141
IGLU62
IGLU107
IGLN141

site_idSWS_FT_FI3
Number of Residues6
DetailsSITE: Essential for association with cargo receptor NCOA4 => ECO:0000269|PubMed:26436293
ChainResidueDetails
GARG22
HARG22
IARG22
JARG22
KARG22
LARG22

site_idSWS_FT_FI4
Number of Residues6
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22814378
ChainResidueDetails
GMET0
HMET0
IMET0
JMET0
KMET0
LMET0

site_idSWS_FT_FI5
Number of Residues6
DetailsMOD_RES: N-acetylthreonine; in Ferritin heavy chain, N-terminally processed => ECO:0007744|PubMed:22814378
ChainResidueDetails
GTHR1
HTHR1
ITHR1
JTHR1
KTHR1
LTHR1

site_idSWS_FT_FI6
Number of Residues6
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:18318008, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:24275569
ChainResidueDetails
GSER178
HSER178
ISER178
JSER178
KSER178
LSER178

site_idSWS_FT_FI7
Number of Residues6
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18318008
ChainResidueDetails
GSER182
HSER182
ISER182
JSER182
KSER182
LSER182

226707

PDB entries from 2024-10-30

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