Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6H08

The crystal structure of engineered cytochrome c peroxidase from Saccharomyces cerevisiae with a His175Me-His proximal ligand substitution

Functional Information from GO Data
ChainGOidnamespacecontents
A0004601molecular_functionperoxidase activity
A0006979biological_processresponse to oxidative stress
A0020037molecular_functionheme binding
A0034599biological_processcellular response to oxidative stress
B0004601molecular_functionperoxidase activity
B0006979biological_processresponse to oxidative stress
B0020037molecular_functionheme binding
B0034599biological_processcellular response to oxidative stress
C0004601molecular_functionperoxidase activity
C0006979biological_processresponse to oxidative stress
C0020037molecular_functionheme binding
C0034599biological_processcellular response to oxidative stress
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue HEM A 301
ChainResidue
APRO44
AGLY178
ALYS179
ATHR180
AHIS181
AASN184
ASER185
ATRP191
ALEU232
AHOH436
AHOH439
AVAL45
AHOH459
AHOH502
AARG48
ATRP51
APRO145
AASP146
ALEU171
AALA174
AMHS175

site_idAC2
Number of Residues5
Detailsbinding site for residue CO A 302
ChainResidue
AHIS0
AHIS2
AHIS60
AHOH524
AHOH585

site_idAC3
Number of Residues6
Detailsbinding site for residue MN A 303
ChainResidue
AHIS1
AHIS3
AHOH441
AHOH564
CASP34
CHOH411

site_idAC4
Number of Residues7
Detailsbinding site for residue NA A 304
ChainResidue
AASP34
AHOH407
AHOH533
BHIS1
BHIS3
BNA301
BHOH503

site_idAC5
Number of Residues7
Detailsbinding site for residue NA B 301
ChainResidue
AASP34
ANA304
AHOH407
AHOH533
BHIS1
BHIS3
BHOH503

site_idAC6
Number of Residues21
Detailsbinding site for residue HEM B 302
ChainResidue
BPRO44
BVAL45
BARG48
BTRP51
BPRO145
BASP146
BLEU171
BALA174
BMHS175
BGLY178
BLYS179
BTHR180
BHIS181
BASN184
BSER185
BTRP191
BLEU232
BHOH415
BHOH422
BHOH461
BHOH470

site_idAC7
Number of Residues4
Detailsbinding site for residue CO B 303
ChainResidue
BHIS-1
BHIS-2
BHOH588
BHOH589

site_idAC8
Number of Residues6
Detailsbinding site for residue CO B 304
ChainResidue
BHIS0
BHIS2
BHIS60
BHOH534
BHOH550
BHOH561

site_idAC9
Number of Residues22
Detailsbinding site for residue HEM C 301
ChainResidue
CPRO44
CVAL45
CARG48
CTRP51
CPRO145
CASP146
CLEU171
CALA174
CMHS175
CGLY178
CLYS179
CTHR180
CHIS181
CASN184
CSER185
CTRP191
CLEU232
CHOH402
CHOH410
CHOH412
CHOH418
CHOH449

site_idAD1
Number of Residues7
Detailsbinding site for residue CO C 302
ChainResidue
BASP34
BHOH407
BHOH546
BHOH547
CHIS1
CHIS3
CHOH405

site_idAD2
Number of Residues6
Detailsbinding site for residue CO C 303
ChainResidue
CHIS0
CHIS2
CHIS60
CHOH488
CHOH568
CHOH570

site_idAD3
Number of Residues3
Detailsbinding site for residue CO C 304
ChainResidue
BHOH624
CHIS-1
CHIS-2

Functional Information from PROSITE/UniProt
site_idPS00435
Number of Residues11
DetailsPEROXIDASE_1 Peroxidases proximal heme-ligand signature. EVVALMGAHAL
ChainResidueDetails
AGLU167-LEU177

site_idPS00436
Number of Residues12
DetailsPEROXIDASE_2 Peroxidases active site signature. GPvlVRLaWHTS
ChainResidueDetails
AGLY43-SER54

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Proton acceptor
ChainResidueDetails
AHIS52
BHIS52
CHIS52

site_idSWS_FT_FI2
Number of Residues3
DetailsACT_SITE: Tryptophan radical intermediate => ECO:0000269|PubMed:2851317
ChainResidueDetails
ATRP191
BTRP191
CTRP191

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: axial binding residue => ECO:0000269|PubMed:10722697, ECO:0000269|PubMed:11170452, ECO:0000269|PubMed:2169873, ECO:0000269|PubMed:6092361, ECO:0000269|PubMed:8384877, ECO:0000269|PubMed:8673607
ChainResidueDetails
AMHS175
BMHS175
CMHS175

site_idSWS_FT_FI4
Number of Residues3
DetailsSITE: Transition state stabilizer
ChainResidueDetails
AARG48
BARG48
CARG48

site_idSWS_FT_FI5
Number of Residues3
DetailsMOD_RES: Phosphotyrosine => ECO:0007744|PubMed:18407956
ChainResidueDetails
ATYR153
BTYR153
CTYR153

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 709
ChainResidueDetails
AARG48electrostatic stabiliser
AHIS52electrostatic stabiliser, proton acceptor, proton donor
ATRP191single electron acceptor, single electron donor

site_idMCSA2
Number of Residues3
DetailsM-CSA 709
ChainResidueDetails
BARG48electrostatic stabiliser
BHIS52electrostatic stabiliser, proton acceptor, proton donor
BTRP191single electron acceptor, single electron donor

site_idMCSA3
Number of Residues3
DetailsM-CSA 709
ChainResidueDetails
CARG48electrostatic stabiliser
CHIS52electrostatic stabiliser, proton acceptor, proton donor
CTRP191single electron acceptor, single electron donor

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon