6H08
The crystal structure of engineered cytochrome c peroxidase from Saccharomyces cerevisiae with a His175Me-His proximal ligand substitution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-25 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9159 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 72.920, 106.770, 163.720 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 81.860 - 1.900 |
R-factor | 0.1796 |
Rwork | 0.178 |
R-free | 0.20540 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.222 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 81.860 | 1.930 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.052 | 0.392 |
Rmeas | 0.057 | 0.425 |
Rpim | 0.022 | 0.163 |
Number of reflections | 100412 | 4877 |
<I/σ(I)> | 19.2 | 4.3 |
Completeness [%] | 99.1 | 97.15 |
Redundancy | 6.6 | 6.5 |
CC(1/2) | 0.999 | 0.966 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 277 | 5 mM cobalt(II) chloride hexahydrate, 5 mM cadmium chloride hemi(pentahydrate), 5 mM magnesium chloride hexahydrate, 5 mM nickel(II) chloride hexahydrate, 0.1 M HEPES pH 7.5 and 12% w/v PEG 3350 |