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6GS4

Crystal structure of peptide transporter DtpA-nanobody in complex with valganciclovir

Functional Information from GO Data
ChainGOidnamespacecontents
A0005886cellular_componentplasma membrane
A0006857biological_processoligopeptide transport
A0015031biological_processprotein transport
A0015333molecular_functionpeptide:proton symporter activity
A0015833biological_processpeptide transport
A0016020cellular_componentmembrane
A0022857molecular_functiontransmembrane transporter activity
A0035442biological_processdipeptide transmembrane transport
A0035443biological_processtripeptide transmembrane transport
A0042937molecular_functiontripeptide transmembrane transporter activity
A0042938biological_processdipeptide transport
A0042939biological_processtripeptide transport
A0055085biological_processtransmembrane transport
A0071916molecular_functiondipeptide transmembrane transporter activity
A1902600biological_processproton transmembrane transport
A1904680molecular_functionpeptide transmembrane transporter activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue F9E A 601
ChainResidue
ATYR38
ALYS130
ATYR156
AASN160
APHE289
AASN325
APRO326
AGLU396
ALEU402

site_idAC2
Number of Residues5
Detailsbinding site for residue LMT A 602
ChainResidue
ALEU365
APRO368
ALEU369
ALYS372
ALEU462

Functional Information from PROSITE/UniProt
site_idPS00778
Number of Residues17
DetailsHIS_ACID_PHOSPHAT_2 Histidine acid phosphatases active site signature. LvAWsGHDAGIvyMgmA
ChainResidueDetails
ALEU104-ALA120

site_idPS01022
Number of Residues25
DetailsPTR2_1 PTR2 family proton/oligopeptide symporters signature 1. GGWLGDkVLGtkrVImlgAiVlaiG
ChainResidueDetails
AGLY77-GLY101

site_idPS01023
Number of Residues13
DetailsPTR2_2 PTR2 family proton/oligopeptide symporters signature 2. FtmYYMsVNIGSF
ChainResidueDetails
APHE152-PHE164

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues282
DetailsTransmembrane: {"description":"Helical","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues74
DetailsTopological domain: {"description":"Periplasmic","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues47
DetailsTopological domain: {"description":"Cytoplasmic","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

243911

PDB entries from 2025-10-29

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