6GNI
Cryo-tomography and subtomogram averaging of Sar1-Sec23-Sec24 - fitted model.
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000139 | cellular_component | Golgi membrane |
| A | 0003400 | biological_process | regulation of COPII vesicle coating |
| A | 0005096 | molecular_function | GTPase activator activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005783 | cellular_component | endoplasmic reticulum |
| A | 0005789 | cellular_component | endoplasmic reticulum membrane |
| A | 0006886 | biological_process | intracellular protein transport |
| A | 0006888 | biological_process | endoplasmic reticulum to Golgi vesicle-mediated transport |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0012507 | cellular_component | ER to Golgi transport vesicle membrane |
| A | 0015031 | biological_process | protein transport |
| A | 0016192 | biological_process | vesicle-mediated transport |
| A | 0016236 | biological_process | macroautophagy |
| A | 0030127 | cellular_component | COPII vesicle coat |
| A | 0031410 | cellular_component | cytoplasmic vesicle |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0061709 | biological_process | reticulophagy |
| A | 0070863 | biological_process | positive regulation of protein exit from endoplasmic reticulum |
| A | 0070971 | cellular_component | endoplasmic reticulum exit site |
| A | 0090110 | biological_process | COPII-coated vesicle cargo loading |
| A | 0090114 | biological_process | COPII-coated vesicle budding |
| A | 1902953 | biological_process | positive regulation of ER to Golgi vesicle-mediated transport |
| B | 0003924 | molecular_function | GTPase activity |
| B | 0005525 | molecular_function | GTP binding |
| B | 0006886 | biological_process | intracellular protein transport |
| E | 0006886 | biological_process | intracellular protein transport |
| E | 0006888 | biological_process | endoplasmic reticulum to Golgi vesicle-mediated transport |
| E | 0008270 | molecular_function | zinc ion binding |
| E | 0030127 | cellular_component | COPII vesicle coat |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 801 |
| Chain | Residue |
| A | CYS56 |
| A | CYS61 |
| A | CYS80 |
| A | CYS83 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue ZN E 1001 |
| Chain | Residue |
| E | CYS231 |
| E | CYS234 |
| E | CYS253 |
| E | CYS256 |
| site_id | AC3 |
| Number of Residues | 18 |
| Details | binding site for residue GNP B 201 |
| Chain | Residue |
| B | ASP32 |
| B | ASN33 |
| B | ALA34 |
| B | GLY35 |
| B | LYS36 |
| B | THR37 |
| B | THR38 |
| B | PRO53 |
| B | THR54 |
| B | GLY76 |
| B | ASN132 |
| B | LYS133 |
| B | ASP135 |
| B | SER172 |
| B | VAL173 |
| B | VAL174 |
| B | MG202 |
| A | ARG722 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue MG B 202 |
| Chain | Residue |
| B | THR37 |
| B | THR54 |
| B | GNP201 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"12239560","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 25 |
| Details | Region: {"description":"Zinc finger-like"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"12239560","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12941276","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17330950","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 13 |
| Details | Binding site: {} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
