6GNI

Cryo-tomography and subtomogram averaging of Sar1-Sec23-Sec24 - fitted model.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000139	cellular_component	Golgi membrane
A	0003400	biological_process	regulation of COPII vesicle coating
A	0005096	molecular_function	GTPase activator activity
A	0005515	molecular_function	protein binding
A	0005737	cellular_component	cytoplasm
A	0005783	cellular_component	endoplasmic reticulum
A	0005789	cellular_component	endoplasmic reticulum membrane
A	0005794	cellular_component	Golgi apparatus
A	0006886	biological_process	intracellular protein transport
A	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
A	0008270	molecular_function	zinc ion binding
A	0012507	cellular_component	ER to Golgi transport vesicle membrane
A	0015031	biological_process	protein transport
A	0016020	cellular_component	membrane
A	0016192	biological_process	vesicle-mediated transport
A	0016236	biological_process	macroautophagy
A	0030127	cellular_component	COPII vesicle coat
A	0031410	cellular_component	cytoplasmic vesicle
A	0046872	molecular_function	metal ion binding
A	0061709	biological_process	reticulophagy
A	0070863	biological_process	positive regulation of protein exit from endoplasmic reticulum
A	0070971	cellular_component	endoplasmic reticulum exit site
A	0090110	biological_process	COPII-coated vesicle cargo loading
A	0090114	biological_process	COPII-coated vesicle budding
A	1902953	biological_process	positive regulation of ER to Golgi vesicle-mediated transport
B	0003924	molecular_function	GTPase activity
B	0005525	molecular_function	GTP binding
B	0006886	biological_process	intracellular protein transport
E	0006886	biological_process	intracellular protein transport
E	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
E	0008270	molecular_function	zinc ion binding
E	0030127	cellular_component	COPII vesicle coat

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue ZN A 801

Chain	Residue
A	CYS56
A	CYS61
A	CYS80
A	CYS83

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site_id	AC2
Number of Residues	4
Details	binding site for residue ZN E 1001

Chain	Residue
E	CYS231
E	CYS234
E	CYS253
E	CYS256

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site_id	AC3
Number of Residues	18
Details	binding site for residue GNP B 201

Chain	Residue
B	ASP32
B	ASN33
B	ALA34
B	GLY35
B	LYS36
B	THR37
B	THR38
B	PRO53
B	THR54
B	GLY76
B	ASN132
B	LYS133
B	ASP135
B	SER172
B	VAL173
B	VAL174
B	MG202
A	ARG722

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site_id	AC4
Number of Residues	3
Details	binding site for residue MG B 202

Chain	Residue
B	THR37
B	THR54
B	GNP201

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	3
Details	BINDING:

Chain	Residue	Details
B	GLY30
B	ASP73
B	ASN132
E	CYS256

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site_id	SWS_FT_FI2
Number of Residues	1
Details	MOD_RES: Phosphothreonine => ECO:0007744|PubMed:19779198

Chain	Residue	Details
B	THR155

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site_id	SWS_FT_FI3
Number of Residues	1
Details	MOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198

Chain	Residue	Details
B	SER157

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site_id	SWS_FT_FI4
Number of Residues	2
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047

Chain	Residue	Details
B	LYS133

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