Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6GD8

Cytochrome c in complex with Sulfonato-calix[8]arene, P31 form

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005515	molecular_function	protein binding
A	0005739	cellular_component	mitochondrion
A	0005758	cellular_component	mitochondrial intermembrane space
A	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
A	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
A	0009055	molecular_function	electron transfer activity
A	0020037	molecular_function	heme binding
A	0022904	biological_process	respiratory electron transport chain
A	0046872	molecular_function	metal ion binding
A	1901612	molecular_function	cardiolipin binding
B	0005515	molecular_function	protein binding
B	0005739	cellular_component	mitochondrion
B	0005758	cellular_component	mitochondrial intermembrane space
B	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
B	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
B	0009055	molecular_function	electron transfer activity
B	0020037	molecular_function	heme binding
B	0022904	biological_process	respiratory electron transport chain
B	0046872	molecular_function	metal ion binding
B	1901612	molecular_function	cardiolipin binding
C	0005515	molecular_function	protein binding
C	0005739	cellular_component	mitochondrion
C	0005758	cellular_component	mitochondrial intermembrane space
C	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
C	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
C	0009055	molecular_function	electron transfer activity
C	0020037	molecular_function	heme binding
C	0022904	biological_process	respiratory electron transport chain
C	0046872	molecular_function	metal ion binding
C	1901612	molecular_function	cardiolipin binding
D	0005515	molecular_function	protein binding
D	0005739	cellular_component	mitochondrion
D	0005758	cellular_component	mitochondrial intermembrane space
D	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
D	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
D	0009055	molecular_function	electron transfer activity
D	0020037	molecular_function	heme binding
D	0022904	biological_process	respiratory electron transport chain
D	0046872	molecular_function	metal ion binding
D	1901612	molecular_function	cardiolipin binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	20
Details	binding site for residue HEC A 201

Chain	Residue
A	ARG13
A	TYR48
A	THR49
A	ASN52
A	TRP59
A	TYR67
A	LEU68
A	THR78
A	LYS79
A	MET80
A	LEU94
A	CYS14
A	HOH303
A	CYS17
A	HIS18
A	VAL28
A	GLY29
A	SER40
A	GLY41
A	TYR46

site_id	AC2
Number of Residues	13
Details	binding site for residue EVB A 202

Chain	Residue
A	LYS4
A	THR8
A	LYS11
A	THR12
A	ARG13
A	LEU15
A	HOH307
A	HOH310
C	LYS4
C	LYS5
C	THR8
C	LYS11
C	THR12

site_id	AC3
Number of Residues	16
Details	binding site for residue EVB A 203

Chain	Residue
A	THR69
A	ASN70
A	LYS72
A	LYS73
A	GLY83
A	GLY84
A	LYS86
A	LYS87
A	HOH311
B	THR69
B	ASN70
B	LYS72
B	LYS73
B	GLY83
B	GLY84
B	LYS86

site_id	AC4
Number of Residues	14
Details	binding site for residue EVB B 202

Chain	Residue
B	LYS4
B	LYS5
B	THR8
B	LYS11
B	THR12
B	ARG13
B	LYS89
B	HOH304
B	HOH308
D	LYS4
D	LYS5
D	THR8
D	LYS11
D	THR12

site_id	AC5
Number of Residues	6
Details	binding site for residue EVB C 202

Chain	Residue
B	HIS26
C	ARG13
C	PHE82
C	GLY83
C	GLY84
C	LYS86

site_id	AC6
Number of Residues	22
Details	binding site for Di-peptide HEC B 201 and CYS B 14

Chain	Residue
B	PHE10
B	ARG13
B	LEU15
B	GLN16
B	CYS17
B	HIS18
B	VAL28
B	GLY29
B	PRO30
B	ILE35
B	SER40
B	GLY41
B	TYR46
B	TYR48
B	THR49
B	ASN52
B	TRP59
B	LEU68
B	THR78
B	LYS79
B	MET80
B	LEU94

site_id	AC7
Number of Residues	22
Details	binding site for Di-peptide HEC B 201 and CYS B 17

Chain	Residue
B	PRO30
B	ILE35
B	SER40
B	GLY41
B	TYR46
B	TYR48
B	THR49
B	ASN52
B	TRP59
B	LEU68
B	THR78
B	LYS79
B	MET80
B	LEU94
B	ARG13
B	CYS14
B	LEU15
B	GLN16
B	HIS18
B	LYS27
B	VAL28
B	GLY29

site_id	AC8
Number of Residues	21
Details	binding site for Di-peptide HEC C 201 and CYS C 14

Chain	Residue
C	PHE10
C	ARG13
C	LEU15
C	GLN16
C	CYS17
C	HIS18
C	VAL28
C	GLY29
C	SER40
C	GLY41
C	TYR46
C	TYR48
C	THR49
C	ASN52
C	TRP59
C	LEU68
C	THR78
C	LYS79
C	MET80
C	LEU94
C	HOH303

site_id	AC9
Number of Residues	21
Details	binding site for Di-peptide HEC C 201 and CYS C 17

Chain	Residue
C	ARG13
C	CYS14
C	LEU15
C	GLN16
C	HIS18
C	LYS27
C	VAL28
C	GLY29
C	SER40
C	GLY41
C	TYR46
C	TYR48
C	THR49
C	ASN52
C	TRP59
C	LEU68
C	THR78
C	LYS79
C	MET80
C	LEU94
C	HOH303

site_id	AD1
Number of Residues	21
Details	binding site for Di-peptide HEC C 201 and CYS C 14

Chain	Residue
C	PHE10
C	ARG13
C	LEU15
C	GLN16
C	CYS17
C	HIS18
C	VAL28
C	GLY29
C	SER40
C	GLY41
C	TYR46
C	TYR48
C	THR49
C	ASN52
C	TRP59
C	LEU68
C	THR78
C	LYS79
C	MET80
C	LEU94
C	HOH303

site_id	AD2
Number of Residues	23
Details	binding site for Di-peptide HEC D 201 and CYS D 17

Chain	Residue
D	ARG13
D	CYS14
D	LEU15
D	GLN16
D	HIS18
D	LYS27
D	VAL28
D	GLY29
D	PRO30
D	ILE35
D	SER40
D	GLY41
D	TYR46
D	TYR48
D	THR49
D	ASN52
D	TRP59
D	LEU68
D	THR78
D	LYS79
D	MET80
D	LEU94
D	HOH302

site_id	AD3
Number of Residues	23
Details	binding site for Di-peptide HEC D 201 and CYS D 14

Chain	Residue
D	PHE10
D	ARG13
D	LEU15
D	GLN16
D	CYS17
D	HIS18
D	VAL28
D	GLY29
D	PRO30
D	ILE35
D	SER40
D	GLY41
D	TYR46
D	TYR48
D	THR49
D	ASN52
D	TRP59
D	LEU68
D	THR78
D	LYS79
D	MET80
D	LEU94
D	HOH302

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	8
Details	Binding site: {"description":"covalent","evidences":[{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3CX5","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	8
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3CX5","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	4
Details	Modified residue: {"description":"N6,N6,N6-trimethyllysine; by CTM1","evidences":[{"source":"PubMed","id":"10791961","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	4
Details	Modified residue: {"description":"N6,N6,N6-trimethyllysine","evidences":[{"source":"PubMed","id":"10821864","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)