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6G5Y

The X-ray structure of the adduct formed in the reaction between lysozyme and a platinum(II) terpyridine compound (acid pH)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003796molecular_functionlysozyme activity
A0003824molecular_functioncatalytic activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0005737cellular_componentcytoplasm
A0005783cellular_componentendoplasmic reticulum
A0008152biological_processmetabolic process
A0016231molecular_functionbeta-N-acetylglucosaminidase activity
A0016787molecular_functionhydrolase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0016998biological_processcell wall macromolecule catabolic process
A0031640biological_processkilling of cells of another organism
A0042742biological_processdefense response to bacterium
A0042802molecular_functionidentical protein binding
A0050829biological_processdefense response to Gram-negative bacterium
A0050830biological_processdefense response to Gram-positive bacterium
A0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue NO3 A 201
ChainResidue
AASN65
AASN74
AASN77
AILE78
APRO79

site_idAC2
Number of Residues9
Detailsbinding site for residue NO3 A 202
ChainResidue
AARG68
ATHR69
ASER72
AHOH301
AHOH337
ACYS64
AASN65
AASP66
AGLY67

site_idAC3
Number of Residues9
Detailsbinding site for residue NO3 A 203
ChainResidue
AARG21
AVAL99
ASER100
AGLY102
AASN103
AGLY104
AVAL109
AASN113
AHOH349

site_idAC4
Number of Residues5
Detailsbinding site for residue PT A 204
ChainResidue
ALYS1
AGLU7
ADMS212
AHOH316
AHOH373

site_idAC5
Number of Residues4
Detailsbinding site for residue PT A 205
ChainResidue
AARG14
AHIS15
ADMS217
AHOH382

site_idAC6
Number of Residues4
Detailsbinding site for residue PT A 206
ChainResidue
AHIS15
ADMS216
ADMS218
AHOH310

site_idAC7
Number of Residues5
Detailsbinding site for residue PT A 207
ChainResidue
ALYS13
ALEU129
ALEU129
ADMS214
ADMS214

site_idAC8
Number of Residues5
Detailsbinding site for residue PT A 208
ChainResidue
ALYS96
ADMS218
AHOH381
AHOH386
AHOH408

site_idAC9
Number of Residues4
Detailsbinding site for residue PT A 209
ChainResidue
AASN93
ALYS97
AHOH380
AHOH390

site_idAD1
Number of Residues4
Detailsbinding site for residue PT A 210
ChainResidue
AASP101
AHOH304
AHOH402
AHOH411

site_idAD2
Number of Residues3
Detailsbinding site for residue PT A 211
ChainResidue
ALYS1
AHOH322
AHOH391

site_idAD3
Number of Residues3
Detailsbinding site for residue DMS A 212
ChainResidue
ALYS1
APT204
AHOH373

site_idAD4
Number of Residues5
Detailsbinding site for residue DMS A 213
ChainResidue
AALA10
AALA11
AARG14
AARG14
ADMS217

site_idAD5
Number of Residues6
Detailsbinding site for residue DMS A 214
ChainResidue
ALYS13
AASP18
APRO70
ALEU129
APT207
APT207

site_idAD6
Number of Residues5
Detailsbinding site for residue DMS A 215
ChainResidue
ASER24
ALEU25
AGLY26
AGLN121
AILE124

site_idAD7
Number of Residues6
Detailsbinding site for residue DMS A 216
ChainResidue
AARG14
AHIS15
AARG128
APT206
ADMS218
AHOH331

site_idAD8
Number of Residues6
Detailsbinding site for residue DMS A 217
ChainResidue
ALYS1
AGLU7
AARG14
APT205
ADMS213
AHOH338

site_idAD9
Number of Residues7
Detailsbinding site for residue DMS A 218
ChainResidue
AASN93
ALYS96
AARG128
APT206
APT208
ADMS216
AHOH310

Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC
ChainResidueDetails
ACYS76-CYS94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU35
AASP52

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING:
ChainResidueDetails
AASP101

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
AGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AASN46
AASP48
ASER50
AASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
AASN59

218853

PDB entries from 2024-04-24

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