6G58
Structure of the alanine racemase from Staphylococcus aureus in complex with a pyridoxal 5' phosphate-derivative
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0005829 | cellular_component | cytosol |
A | 0006522 | biological_process | alanine metabolic process |
A | 0008784 | molecular_function | alanine racemase activity |
A | 0009252 | biological_process | peptidoglycan biosynthetic process |
A | 0016853 | molecular_function | isomerase activity |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0030632 | biological_process | D-alanine biosynthetic process |
B | 0003824 | molecular_function | catalytic activity |
B | 0005829 | cellular_component | cytosol |
B | 0006522 | biological_process | alanine metabolic process |
B | 0008784 | molecular_function | alanine racemase activity |
B | 0009252 | biological_process | peptidoglycan biosynthetic process |
B | 0016853 | molecular_function | isomerase activity |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0030632 | biological_process | D-alanine biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 16 |
Details | binding site for residue EOW A 401 |
Chain | Residue |
A | LYS39 |
A | GLY221 |
A | ILE222 |
A | TYR354 |
A | HOH587 |
A | HOH663 |
B | ACT412 |
B | HOH559 |
A | TYR43 |
A | LEU85 |
A | LYS131 |
A | ARG138 |
A | HIS168 |
A | ASN203 |
A | SER204 |
A | ARG219 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue NA A 402 |
Chain | Residue |
A | ASN359 |
B | HOH502 |
B | HOH629 |
B | HOH680 |
B | HOH706 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue NA A 403 |
Chain | Residue |
A | ILE154 |
A | TYR157 |
A | LEU160 |
A | HOH607 |
A | HOH629 |
A | HOH709 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue NA A 404 |
Chain | Residue |
A | TYR284 |
A | ACT408 |
A | HOH554 |
A | HOH726 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue MPD A 405 |
Chain | Residue |
A | ARG290 |
A | ARG309 |
A | HOH544 |
A | HOH680 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue MPD A 406 |
Chain | Residue |
A | LEU209 |
A | MET210 |
A | HOH550 |
A | HOH667 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue MPD A 407 |
Chain | Residue |
A | THR79 |
A | ARG100 |
site_id | AC8 |
Number of Residues | 9 |
Details | binding site for residue ACT A 408 |
Chain | Residue |
A | TYR265 |
A | TYR284 |
A | CYS311 |
A | MET312 |
A | NA404 |
A | HOH537 |
A | HOH553 |
B | LYS39 |
B | EOW401 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue ACT A 409 |
Chain | Residue |
A | SER8 |
A | VAL251 |
A | GLY326 |
B | PRO89 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue ACT A 410 |
Chain | Residue |
A | ASN31 |
A | LYS32 |
A | GLN213 |
A | CYS215 |
site_id | AD2 |
Number of Residues | 3 |
Details | binding site for residue ACT A 411 |
Chain | Residue |
A | LYS236 |
B | SER207 |
B | MET210 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue ACT A 412 |
Chain | Residue |
A | TYR5 |
A | TYR10 |
A | ILE367 |
A | ARG374 |
A | HOH604 |
site_id | AD4 |
Number of Residues | 6 |
Details | binding site for residue NA B 402 |
Chain | Residue |
B | ILE154 |
B | TYR157 |
B | LEU160 |
B | HOH566 |
B | HOH610 |
B | HOH711 |
site_id | AD5 |
Number of Residues | 5 |
Details | binding site for residue NA B 403 |
Chain | Residue |
B | TYR265 |
B | TYR284 |
B | ACT412 |
B | HOH585 |
B | HOH726 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue NA B 404 |
Chain | Residue |
B | GLN213 |
B | CYS215 |
B | HOH569 |
B | HOH697 |
B | HOH698 |
site_id | AD7 |
Number of Residues | 3 |
Details | binding site for residue CL B 405 |
Chain | Residue |
B | LYS131 |
B | MET136 |
B | ARG138 |
site_id | AD8 |
Number of Residues | 2 |
Details | binding site for residue MPD B 406 |
Chain | Residue |
B | ARG290 |
B | HOH541 |
site_id | AD9 |
Number of Residues | 5 |
Details | binding site for residue MPD B 407 |
Chain | Residue |
A | TYR5 |
A | TYR6 |
A | SER8 |
B | LYS91 |
B | ASP92 |
site_id | AE1 |
Number of Residues | 4 |
Details | binding site for residue MPD B 408 |
Chain | Residue |
A | GLN258 |
B | ARG74 |
B | THR79 |
B | ARG100 |
site_id | AE2 |
Number of Residues | 2 |
Details | binding site for residue MPD B 409 |
Chain | Residue |
B | PRO30 |
B | ASN31 |
site_id | AE3 |
Number of Residues | 4 |
Details | binding site for residue MPD B 410 |
Chain | Residue |
B | GLY77 |
B | THR79 |
B | HOH555 |
B | GLU56 |
site_id | AE4 |
Number of Residues | 3 |
Details | binding site for residue MRD B 411 |
Chain | Residue |
B | ILE118 |
B | GLN159 |
B | HOH554 |
site_id | AE5 |
Number of Residues | 9 |
Details | binding site for residue ACT B 412 |
Chain | Residue |
A | LYS39 |
A | EOW401 |
B | TYR265 |
B | TYR284 |
B | CYS311 |
B | MET312 |
B | NA403 |
B | HOH516 |
B | HOH559 |
site_id | AE6 |
Number of Residues | 9 |
Details | binding site for residue GOL B 413 |
Chain | Residue |
A | VAL252 |
A | PRO281 |
A | GLN314 |
B | GLY86 |
B | VAL87 |
B | HOH525 |
B | HOH535 |
B | HOH573 |
B | HOH686 |
site_id | AE7 |
Number of Residues | 25 |
Details | binding site for Di-peptide EOW B 401 and LYS B 39 |
Chain | Residue |
A | MET312 |
A | ASP313 |
A | ACT408 |
A | HOH553 |
A | HOH658 |
B | VAL37 |
B | VAL38 |
B | ALA40 |
B | ASN41 |
B | ALA42 |
B | TYR43 |
B | ALA63 |
B | ALA65 |
B | GLU69 |
B | LEU85 |
B | LYS131 |
B | ARG138 |
B | HIS168 |
B | ASN203 |
B | SER204 |
B | ARG219 |
B | GLY221 |
B | ILE222 |
B | TYR354 |
B | HOH579 |
Functional Information from PROSITE/UniProt
site_id | PS00395 |
Number of Residues | 11 |
Details | ALANINE_RACEMASE Alanine racemase pyridoxal-phosphate attachment site. AVvKANAYGLG |
Chain | Residue | Details |
A | ALA36-GLY46 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor; specific for D-alanine => ECO:0000305|PubMed:22194336 |
Chain | Residue | Details |
A | LYS39 | |
B | LYS39 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor; specific for L-alanine => ECO:0000305|PubMed:22194336 |
Chain | Residue | Details |
A | TYR265 | |
B | TYR265 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01201 |
Chain | Residue | Details |
A | ARG138 | |
B | ARG138 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000305 |
Chain | Residue | Details |
A | MET312 | |
B | MET312 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine |
Chain | Residue | Details |
A | LYS39 | |
B | LYS39 |