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6FRD

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-637

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue ZN A 1001
ChainResidue
AHIS673
AHIS709
AASP710
AASP822
AHOH1116
AHOH1146

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 1002
ChainResidue
AHOH1127
AHOH1150
AHOH1172
AASP710
AHOH1116
AHOH1123

site_idAC3
Number of Residues6
Detailsbinding site for residue GAI A 1003
ChainResidue
AGLY688
ALYS693
ACYS893
ALEU894
AGLY896
AHOH1114

site_idAC4
Number of Residues6
Detailsbinding site for residue GAI A 1004
ChainResidue
ALEU753
ASER754
AASP759
AASP762
AARG769
ALEU915

site_idAC5
Number of Residues7
Detailsbinding site for residue GAI A 1005
ChainResidue
ASER639
ALEU641
ALYS644
ATYR686
AGAI1008
AHOH1144
BGLU696

site_idAC6
Number of Residues2
Detailsbinding site for residue FMT A 1006
ChainResidue
ATYR686
AASN689

site_idAC7
Number of Residues1
Detailsbinding site for residue FMT A 1007
ChainResidue
AASP778

site_idAC8
Number of Residues6
Detailsbinding site for residue GAI A 1008
ChainResidue
ASER639
AHIS682
ATYR686
AGAI1005
BLYS644
BGLU696

site_idAC9
Number of Residues6
Detailsbinding site for residue ZN B 1001
ChainResidue
BHIS673
BHIS709
BASP710
BASP822
BHOH1114
BHOH1156

site_idAD1
Number of Residues6
Detailsbinding site for residue MG B 1002
ChainResidue
BASP710
BHOH1114
BHOH1137
BHOH1150
BHOH1159
BHOH1165

site_idAD2
Number of Residues7
Detailsbinding site for residue GAI B 1003
ChainResidue
BGLY688
BASN689
BGLU692
BLYS693
BLEU894
BGLY896
BHOH1168

site_idAD3
Number of Residues3
Detailsbinding site for residue GAI B 1004
ChainResidue
ATYR691
BGLU696
BHOH1164

site_idAD4
Number of Residues6
Detailsbinding site for residue GAI B 1005
ChainResidue
BLEU753
BSER754
BASP755
BPRO756
BASP759
BASP762

site_idAD5
Number of Residues9
Detailsbinding site for residue E3Q B 1006
ChainResidue
BMET785
BASN825
BVAL840
BTHR841
BMET861
BLEU870
BGLY873
BGLN874
BPHE877

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDLdHmGlnNsF
ChainResidueDetails
AHIS709-PHE720

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PDB entries from 2024-07-17

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