6FQM
3.06A COMPLEX OF S.AUREUS GYRASE with imidazopyrazinone T1 AND DNA
Functional Information from GO Data
Chain | GOid | namespace | contents |
a | 0003677 | molecular_function | DNA binding |
a | 0003918 | molecular_function | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity |
a | 0005524 | molecular_function | ATP binding |
a | 0006259 | biological_process | DNA metabolic process |
a | 0006265 | biological_process | DNA topological change |
A | 0003677 | molecular_function | DNA binding |
A | 0003918 | molecular_function | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity |
A | 0005524 | molecular_function | ATP binding |
A | 0006259 | biological_process | DNA metabolic process |
A | 0006265 | biological_process | DNA topological change |
b | 0003677 | molecular_function | DNA binding |
b | 0003918 | molecular_function | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity |
b | 0005524 | molecular_function | ATP binding |
b | 0006265 | biological_process | DNA topological change |
B | 0003677 | molecular_function | DNA binding |
B | 0003918 | molecular_function | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity |
B | 0005524 | molecular_function | ATP binding |
B | 0006265 | biological_process | DNA topological change |
c | 0003677 | molecular_function | DNA binding |
c | 0003918 | molecular_function | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity |
c | 0005524 | molecular_function | ATP binding |
c | 0006259 | biological_process | DNA metabolic process |
c | 0006265 | biological_process | DNA topological change |
C | 0003677 | molecular_function | DNA binding |
C | 0003918 | molecular_function | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity |
C | 0005524 | molecular_function | ATP binding |
C | 0006259 | biological_process | DNA metabolic process |
C | 0006265 | biological_process | DNA topological change |
d | 0003677 | molecular_function | DNA binding |
d | 0003918 | molecular_function | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity |
d | 0005524 | molecular_function | ATP binding |
d | 0006265 | biological_process | DNA topological change |
D | 0003677 | molecular_function | DNA binding |
D | 0003918 | molecular_function | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity |
D | 0005524 | molecular_function | ATP binding |
D | 0006265 | biological_process | DNA topological change |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue MN B 901 |
Chain | Residue |
B | ASP508 |
B | ASP510 |
B | HOH1003 |
B | HOH1004 |
B | HOH1005 |
F | HOH201 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue MN D 901 |
Chain | Residue |
D | HOH1003 |
D | HOH1004 |
D | HOH1005 |
D | ASP508 |
D | ASP510 |
D | HOH1001 |
site_id | AC3 |
Number of Residues | 2 |
Details | binding site for residue SO4 C 1101 |
Chain | Residue |
A | ARG429 |
C | ARG429 |
site_id | AC4 |
Number of Residues | 10 |
Details | binding site for residue E32 E 1001 |
Chain | Residue |
A | ARG122 |
A | PTR123 |
C | SER84 |
D | ARG458 |
D | GLY459 |
D | GLU477 |
E | DT-1 |
E | DG1 |
F | DC4 |
F | DA5 |
site_id | AC5 |
Number of Residues | 3 |
Details | binding site for residue GOL E 1002 |
Chain | Residue |
E | DA-5 |
E | DG-6 |
E | DG-4 |
site_id | AC6 |
Number of Residues | 8 |
Details | binding site for residue E32 E 1003 |
Chain | Residue |
A | SER84 |
B | ARG458 |
C | ARG122 |
C | PTR123 |
E | DC4 |
E | DA5 |
F | DT-1 |
F | DG1 |
site_id | AC7 |
Number of Residues | 3 |
Details | binding site for residue E32 F 101 |
Chain | Residue |
E | DT11 |
F | DA-7 |
F | DG-8 |
site_id | AC8 |
Number of Residues | 7 |
Details | binding site for residue MN b 901 |
Chain | Residue |
b | GLU435 |
b | ASP508 |
b | ASP510 |
b | HOH1002 |
b | HOH1003 |
b | HOH1005 |
f | HOH1102 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue MN d 901 |
Chain | Residue |
d | ASP508 |
d | ASP510 |
d | HOH1001 |
d | HOH1002 |
d | HOH1003 |
d | HOH1004 |
site_id | AD1 |
Number of Residues | 3 |
Details | binding site for residue SO4 c 1101 |
Chain | Residue |
c | ARG48 |
c | PRO80 |
c | HIS81 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue E32 e 1001 |
Chain | Residue |
c | SER84 |
d | ARG458 |
e | DT-1 |
e | DG1 |
f | DC4 |
f | DA5 |
site_id | AD3 |
Number of Residues | 8 |
Details | binding site for residue E32 f 1001 |
Chain | Residue |
a | SER84 |
b | ARG458 |
c | ARG122 |
c | PTR123 |
e | DC4 |
e | DA5 |
f | DT-1 |
f | DG1 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue E32 f 1002 |
Chain | Residue |
e | DT11 |
f | DG-8 |
f | DA-7 |
Functional Information from PROSITE/UniProt
site_id | PS00177 |
Number of Residues | 9 |
Details | TOPOISOMERASE_II DNA topoisomerase II signature. LVEGDSAGG |
Chain | Residue | Details |
B | LEU433-GLY441 | |
D | LEU433-GLY441 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01898 |
Chain | Residue | Details |
D | GLU435 | |
D | ASP508 | |
D | ASP510 | |
c | PTR123 | |
b | ASP508 | |
b | ASP510 | |
d | GLU435 | |
d | ASP508 | |
d | ASP510 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | SITE: Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898 |
Chain | Residue | Details |
D | LYS460 | |
D | ASN463 | |
b | LYS460 | |
b | ASN463 | |
d | LYS460 | |
d | ASN463 |