6FER
Crystal Structure of human DDR2 kinase in complex with 2-[4,5-difluoro-2-oxo-1'-(1H-pyrazolo[3,4-b]pyridine-5-carbonyl)spiro[indole-3,4'-piperidine]-1-yl]-N-(2,2,2-trifluoroethyl)acetamide
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004672 | molecular_function | protein kinase activity |
A | 0004713 | molecular_function | protein tyrosine kinase activity |
A | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0006468 | biological_process | protein phosphorylation |
A | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
A | 0016020 | cellular_component | membrane |
B | 0004672 | molecular_function | protein kinase activity |
B | 0004713 | molecular_function | protein tyrosine kinase activity |
B | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0006468 | biological_process | protein phosphorylation |
B | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
B | 0016020 | cellular_component | membrane |
C | 0004672 | molecular_function | protein kinase activity |
C | 0004713 | molecular_function | protein tyrosine kinase activity |
C | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0006468 | biological_process | protein phosphorylation |
C | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
C | 0016020 | cellular_component | membrane |
D | 0004672 | molecular_function | protein kinase activity |
D | 0004713 | molecular_function | protein tyrosine kinase activity |
D | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0006468 | biological_process | protein phosphorylation |
D | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
D | 0016020 | cellular_component | membrane |
E | 0004672 | molecular_function | protein kinase activity |
E | 0004713 | molecular_function | protein tyrosine kinase activity |
E | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
E | 0005524 | molecular_function | ATP binding |
E | 0006468 | biological_process | protein phosphorylation |
E | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
E | 0016020 | cellular_component | membrane |
F | 0004672 | molecular_function | protein kinase activity |
F | 0004713 | molecular_function | protein tyrosine kinase activity |
F | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
F | 0005524 | molecular_function | ATP binding |
F | 0006468 | biological_process | protein phosphorylation |
F | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
F | 0016020 | cellular_component | membrane |
G | 0004672 | molecular_function | protein kinase activity |
G | 0004713 | molecular_function | protein tyrosine kinase activity |
G | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
G | 0005524 | molecular_function | ATP binding |
G | 0006468 | biological_process | protein phosphorylation |
G | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
G | 0016020 | cellular_component | membrane |
H | 0004672 | molecular_function | protein kinase activity |
H | 0004713 | molecular_function | protein tyrosine kinase activity |
H | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
H | 0005524 | molecular_function | ATP binding |
H | 0006468 | biological_process | protein phosphorylation |
H | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
H | 0016020 | cellular_component | membrane |
I | 0004672 | molecular_function | protein kinase activity |
I | 0004713 | molecular_function | protein tyrosine kinase activity |
I | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
I | 0005524 | molecular_function | ATP binding |
I | 0006468 | biological_process | protein phosphorylation |
I | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
I | 0016020 | cellular_component | membrane |
J | 0004672 | molecular_function | protein kinase activity |
J | 0004713 | molecular_function | protein tyrosine kinase activity |
J | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
J | 0005524 | molecular_function | ATP binding |
J | 0006468 | biological_process | protein phosphorylation |
J | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
J | 0016020 | cellular_component | membrane |
K | 0004672 | molecular_function | protein kinase activity |
K | 0004713 | molecular_function | protein tyrosine kinase activity |
K | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
K | 0005524 | molecular_function | ATP binding |
K | 0006468 | biological_process | protein phosphorylation |
K | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
K | 0016020 | cellular_component | membrane |
L | 0004672 | molecular_function | protein kinase activity |
L | 0004713 | molecular_function | protein tyrosine kinase activity |
L | 0004714 | molecular_function | transmembrane receptor protein tyrosine kinase activity |
L | 0005524 | molecular_function | ATP binding |
L | 0006468 | biological_process | protein phosphorylation |
L | 0007169 | biological_process | cell surface receptor protein tyrosine kinase signaling pathway |
L | 0016020 | cellular_component | membrane |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 16 |
Details | binding site for residue D6Q A 1001 |
Chain | Residue |
A | VAL624 |
A | MET704 |
A | PHE753 |
A | HIS755 |
A | LEU764 |
A | ALA774 |
A | ASP775 |
A | PHE776 |
A | ALA653 |
A | GLU672 |
A | MET676 |
A | ILE684 |
A | ILE685 |
A | MET699 |
A | THR701 |
A | TYR703 |
site_id | AC2 |
Number of Residues | 17 |
Details | binding site for residue D6Q B 1001 |
Chain | Residue |
B | VAL624 |
B | ALA653 |
B | LYS655 |
B | GLU672 |
B | MET676 |
B | ILE685 |
B | MET699 |
B | THR701 |
B | TYR703 |
B | MET704 |
B | LEU748 |
B | PHE753 |
B | HIS755 |
B | ILE773 |
B | ALA774 |
B | ASP775 |
B | PHE776 |
site_id | AC3 |
Number of Residues | 15 |
Details | binding site for residue D6Q C 1001 |
Chain | Residue |
C | VAL624 |
C | ALA653 |
C | GLU672 |
C | MET676 |
C | ILE684 |
C | MET699 |
C | THR701 |
C | TYR703 |
C | MET704 |
C | PHE753 |
C | HIS755 |
C | LEU764 |
C | ALA774 |
C | ASP775 |
C | PHE776 |
site_id | AC4 |
Number of Residues | 14 |
Details | binding site for residue D6Q D 1001 |
Chain | Residue |
D | LEU616 |
D | VAL624 |
D | ALA653 |
D | MET676 |
D | ILE685 |
D | MET699 |
D | THR701 |
D | TYR703 |
D | MET704 |
D | HIS755 |
D | LEU764 |
D | ALA774 |
D | ASP775 |
D | PHE776 |
site_id | AC5 |
Number of Residues | 14 |
Details | binding site for residue D6Q E 1001 |
Chain | Residue |
E | VAL624 |
E | ALA653 |
E | LYS655 |
E | MET676 |
E | ILE685 |
E | MET699 |
E | THR701 |
E | TYR703 |
E | MET704 |
E | PHE753 |
E | HIS755 |
E | ALA774 |
E | ASP775 |
E | PHE776 |
site_id | AC6 |
Number of Residues | 17 |
Details | binding site for residue D6Q F 1001 |
Chain | Residue |
F | LEU616 |
F | VAL624 |
F | ALA653 |
F | LYS655 |
F | GLU672 |
F | MET676 |
F | LEU679 |
F | ILE685 |
F | MET699 |
F | THR701 |
F | TYR703 |
F | MET704 |
F | PHE753 |
F | HIS755 |
F | ALA774 |
F | ASP775 |
F | PHE776 |
site_id | AC7 |
Number of Residues | 14 |
Details | binding site for residue D6Q G 1001 |
Chain | Residue |
G | MET704 |
G | PHE753 |
G | HIS755 |
G | LEU764 |
G | ILE773 |
G | ALA774 |
G | ASP775 |
G | PHE776 |
G | VAL624 |
G | MET676 |
G | ILE685 |
G | MET699 |
G | THR701 |
G | GLU702 |
site_id | AC8 |
Number of Residues | 16 |
Details | binding site for residue D6Q H 1001 |
Chain | Residue |
H | LEU616 |
H | VAL624 |
H | ALA653 |
H | GLU672 |
H | MET676 |
H | ILE685 |
H | MET699 |
H | THR701 |
H | TYR703 |
H | MET704 |
H | PHE753 |
H | HIS755 |
H | LEU764 |
H | ALA774 |
H | ASP775 |
H | PHE776 |
site_id | AC9 |
Number of Residues | 14 |
Details | binding site for residue D6Q I 1001 |
Chain | Residue |
I | LEU616 |
I | VAL624 |
I | ALA653 |
I | MET676 |
I | ILE685 |
I | MET699 |
I | THR701 |
I | TYR703 |
I | MET704 |
I | HIS755 |
I | ILE773 |
I | ALA774 |
I | ASP775 |
I | PHE776 |
site_id | AD1 |
Number of Residues | 16 |
Details | binding site for residue D6Q J 1001 |
Chain | Residue |
J | LEU616 |
J | ALA653 |
J | MET676 |
J | ILE684 |
J | ILE685 |
J | MET699 |
J | THR701 |
J | GLU702 |
J | TYR703 |
J | MET704 |
J | PHE753 |
J | HIS755 |
J | ILE773 |
J | ALA774 |
J | ASP775 |
J | PHE776 |
site_id | AD2 |
Number of Residues | 15 |
Details | binding site for residue D6Q K 1001 |
Chain | Residue |
K | VAL624 |
K | ALA653 |
K | GLU672 |
K | MET676 |
K | ILE684 |
K | ILE685 |
K | MET699 |
K | THR701 |
K | GLU702 |
K | MET704 |
K | HIS755 |
K | ILE773 |
K | ALA774 |
K | ASP775 |
K | PHE776 |
site_id | AD3 |
Number of Residues | 17 |
Details | binding site for residue D6Q L 1001 |
Chain | Residue |
L | LEU616 |
L | LYS655 |
L | GLU672 |
L | MET676 |
L | ILE684 |
L | ILE685 |
L | MET699 |
L | THR701 |
L | TYR703 |
L | MET704 |
L | PHE753 |
L | HIS755 |
L | LEU764 |
L | ILE773 |
L | ALA774 |
L | ASP775 |
L | PHE776 |
Functional Information from PROSITE/UniProt
site_id | PS00109 |
Number of Residues | 13 |
Details | PROTEIN_KINASE_TYR Tyrosine protein kinases specific active-site signature. FVHrDLATRNCLV |
Chain | Residue | Details |
A | PHE753-VAL765 |
site_id | PS00239 |
Number of Residues | 9 |
Details | RECEPTOR_TYR_KIN_II Receptor tyrosine kinase class II signature. NLYsgdYYR |
Chain | Residue | Details |
A | ASN781-ARG789 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 12 |
Details | ACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000255|PROSITE-ProRule:PRU10028 |
Chain | Residue | Details |
A | ASP757 | |
J | ASP757 | |
K | ASP757 | |
L | ASP757 | |
B | ASP757 | |
C | ASP757 | |
D | ASP757 | |
E | ASP757 | |
F | ASP757 | |
G | ASP757 | |
H | ASP757 | |
I | ASP757 |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00159 |
Chain | Residue | Details |
A | LEU616 | |
J | LEU616 | |
K | LEU616 | |
L | LEU616 | |
B | LEU616 | |
C | LEU616 | |
D | LEU616 | |
E | LEU616 | |
F | LEU616 | |
G | LEU616 | |
H | LEU616 | |
I | LEU616 |
site_id | SWS_FT_FI3 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000305 |
Chain | Residue | Details |
A | LYS655 | |
J | LYS655 | |
K | LYS655 | |
L | LYS655 | |
B | LYS655 | |
C | LYS655 | |
D | LYS655 | |
E | LYS655 | |
F | LYS655 | |
G | LYS655 | |
H | LYS655 | |
I | LYS655 |
site_id | SWS_FT_FI4 |
Number of Residues | 36 |
Details | MOD_RES: Phosphotyrosine; by SRC and autocatalysis => ECO:0000269|PubMed:16186108 |
Chain | Residue | Details |
A | TYR783 | |
D | TYR783 | |
D | TYR787 | |
D | TYR788 | |
E | TYR783 | |
E | TYR787 | |
E | TYR788 | |
F | TYR783 | |
F | TYR787 | |
F | TYR788 | |
G | TYR783 | |
A | TYR787 | |
G | TYR787 | |
G | TYR788 | |
H | TYR783 | |
H | TYR787 | |
H | TYR788 | |
I | TYR783 | |
I | TYR787 | |
I | TYR788 | |
J | TYR783 | |
J | TYR787 | |
A | TYR788 | |
J | TYR788 | |
K | TYR783 | |
K | TYR787 | |
K | TYR788 | |
L | TYR783 | |
L | TYR787 | |
L | TYR788 | |
B | TYR783 | |
B | TYR787 | |
B | TYR788 | |
C | TYR783 | |
C | TYR787 | |
C | TYR788 |