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6F0X

Cryo-EM structure of TRIP13 in complex with ATP gamma S, p31comet, C-Mad2 and Cdc20

Functional Information from GO Data
ChainGOidnamespacecontents
A0001556biological_processoocyte maturation
A0001673cellular_componentmale germ cell nucleus
A0003712molecular_functiontranscription coregulator activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005694cellular_componentchromosome
A0006302biological_processdouble-strand break repair
A0006366biological_processtranscription by RNA polymerase II
A0007094biological_processmitotic spindle assembly checkpoint signaling
A0007130biological_processsynaptonemal complex assembly
A0007131biological_processreciprocal meiotic recombination
A0007141biological_processmale meiosis I
A0007144biological_processfemale meiosis I
A0007283biological_processspermatogenesis
A0007286biological_processspermatid development
A0016887molecular_functionATP hydrolysis activity
A0030154biological_processcell differentiation
A0042802molecular_functionidentical protein binding
A0048477biological_processoogenesis
A0051321biological_processmeiotic cell cycle
A0051598biological_processmeiotic recombination checkpoint signaling
B0001556biological_processoocyte maturation
B0001673cellular_componentmale germ cell nucleus
B0003712molecular_functiontranscription coregulator activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0006302biological_processdouble-strand break repair
B0006366biological_processtranscription by RNA polymerase II
B0007094biological_processmitotic spindle assembly checkpoint signaling
B0007130biological_processsynaptonemal complex assembly
B0007131biological_processreciprocal meiotic recombination
B0007141biological_processmale meiosis I
B0007144biological_processfemale meiosis I
B0007283biological_processspermatogenesis
B0007286biological_processspermatid development
B0016887molecular_functionATP hydrolysis activity
B0030154biological_processcell differentiation
B0042802molecular_functionidentical protein binding
B0048477biological_processoogenesis
B0051321biological_processmeiotic cell cycle
B0051598biological_processmeiotic recombination checkpoint signaling
C0001556biological_processoocyte maturation
C0001673cellular_componentmale germ cell nucleus
C0003712molecular_functiontranscription coregulator activity
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005634cellular_componentnucleus
C0005694cellular_componentchromosome
C0006302biological_processdouble-strand break repair
C0006366biological_processtranscription by RNA polymerase II
C0007094biological_processmitotic spindle assembly checkpoint signaling
C0007130biological_processsynaptonemal complex assembly
C0007131biological_processreciprocal meiotic recombination
C0007141biological_processmale meiosis I
C0007144biological_processfemale meiosis I
C0007283biological_processspermatogenesis
C0007286biological_processspermatid development
C0016887molecular_functionATP hydrolysis activity
C0030154biological_processcell differentiation
C0042802molecular_functionidentical protein binding
C0048477biological_processoogenesis
C0051321biological_processmeiotic cell cycle
C0051598biological_processmeiotic recombination checkpoint signaling
D0001556biological_processoocyte maturation
D0001673cellular_componentmale germ cell nucleus
D0003712molecular_functiontranscription coregulator activity
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005634cellular_componentnucleus
D0005694cellular_componentchromosome
D0006302biological_processdouble-strand break repair
D0006366biological_processtranscription by RNA polymerase II
D0007094biological_processmitotic spindle assembly checkpoint signaling
D0007130biological_processsynaptonemal complex assembly
D0007131biological_processreciprocal meiotic recombination
D0007141biological_processmale meiosis I
D0007144biological_processfemale meiosis I
D0007283biological_processspermatogenesis
D0007286biological_processspermatid development
D0016887molecular_functionATP hydrolysis activity
D0030154biological_processcell differentiation
D0042802molecular_functionidentical protein binding
D0048477biological_processoogenesis
D0051321biological_processmeiotic cell cycle
D0051598biological_processmeiotic recombination checkpoint signaling
E0001556biological_processoocyte maturation
E0001673cellular_componentmale germ cell nucleus
E0003712molecular_functiontranscription coregulator activity
E0005515molecular_functionprotein binding
E0005524molecular_functionATP binding
E0005634cellular_componentnucleus
E0005694cellular_componentchromosome
E0006302biological_processdouble-strand break repair
E0006366biological_processtranscription by RNA polymerase II
E0007094biological_processmitotic spindle assembly checkpoint signaling
E0007130biological_processsynaptonemal complex assembly
E0007131biological_processreciprocal meiotic recombination
E0007141biological_processmale meiosis I
E0007144biological_processfemale meiosis I
E0007283biological_processspermatogenesis
E0007286biological_processspermatid development
E0016887molecular_functionATP hydrolysis activity
E0030154biological_processcell differentiation
E0042802molecular_functionidentical protein binding
E0048477biological_processoogenesis
E0051321biological_processmeiotic cell cycle
E0051598biological_processmeiotic recombination checkpoint signaling
F0001556biological_processoocyte maturation
F0001673cellular_componentmale germ cell nucleus
F0003712molecular_functiontranscription coregulator activity
F0005515molecular_functionprotein binding
F0005524molecular_functionATP binding
F0005634cellular_componentnucleus
F0005694cellular_componentchromosome
F0006302biological_processdouble-strand break repair
F0006366biological_processtranscription by RNA polymerase II
F0007094biological_processmitotic spindle assembly checkpoint signaling
F0007130biological_processsynaptonemal complex assembly
F0007131biological_processreciprocal meiotic recombination
F0007141biological_processmale meiosis I
F0007144biological_processfemale meiosis I
F0007283biological_processspermatogenesis
F0007286biological_processspermatid development
F0016887molecular_functionATP hydrolysis activity
F0030154biological_processcell differentiation
F0042802molecular_functionidentical protein binding
F0048477biological_processoogenesis
F0051321biological_processmeiotic cell cycle
F0051598biological_processmeiotic recombination checkpoint signaling
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0005654cellular_componentnucleoplasm
P0005730cellular_componentnucleolus
P0005737cellular_componentcytoplasm
P0005819cellular_componentspindle
P0005856cellular_componentcytoskeleton
P0007096biological_processregulation of exit from mitosis
P0031965cellular_componentnuclear membrane
P1902426biological_processdeactivation of mitotic spindle assembly checkpoint
Q0000775cellular_componentchromosome, centromeric region
Q0000776cellular_componentkinetochore
Q0000922cellular_componentspindle pole
Q0005515molecular_functionprotein binding
Q0005654cellular_componentnucleoplasm
Q0005680cellular_componentanaphase-promoting complex
Q0005694cellular_componentchromosome
Q0005737cellular_componentcytoplasm
Q0005813cellular_componentcentrosome
Q0005819cellular_componentspindle
Q0005829cellular_componentcytosol
Q0005856cellular_componentcytoskeleton
Q0007064biological_processmitotic sister chromatid cohesion
Q0007094biological_processmitotic spindle assembly checkpoint signaling
Q0007346biological_processregulation of mitotic cell cycle
Q0007399biological_processnervous system development
Q0010997molecular_functionanaphase-promoting complex binding
Q0016567biological_processprotein ubiquitination
Q0030154biological_processcell differentiation
Q0031145biological_processanaphase-promoting complex-dependent catabolic process
Q0031915biological_processpositive regulation of synaptic plasticity
Q0033597cellular_componentmitotic checkpoint complex
Q0040020biological_processregulation of meiotic nuclear division
Q0044784biological_processmetaphase/anaphase transition of cell cycle
Q0045842biological_processpositive regulation of mitotic metaphase/anaphase transition
Q0051301biological_processcell division
Q0051445biological_processregulation of meiotic cell cycle
Q0090129biological_processpositive regulation of synapse maturation
Q0090307biological_processmitotic spindle assembly
Q0097027molecular_functionubiquitin-protein transferase activator activity
Q1904668biological_processpositive regulation of ubiquitin protein ligase activity
Q1905786biological_processpositive regulation of anaphase-promoting complex-dependent catabolic process
Q1990756molecular_functionubiquitin-like ligase-substrate adaptor activity
Q1990757molecular_functionubiquitin ligase activator activity
Q1990949biological_processmetaphase/anaphase transition of meiosis I
Z0000070biological_processmitotic sister chromatid segregation
Z0000132biological_processestablishment of mitotic spindle orientation
Z0000775cellular_componentchromosome, centromeric region
Z0000776cellular_componentkinetochore
Z0000922cellular_componentspindle pole
Z0005515molecular_functionprotein binding
Z0005634cellular_componentnucleus
Z0005654cellular_componentnucleoplasm
Z0005694cellular_componentchromosome
Z0005737cellular_componentcytoplasm
Z0005829cellular_componentcytosol
Z0005856cellular_componentcytoskeleton
Z0007094biological_processmitotic spindle assembly checkpoint signaling
Z0033597cellular_componentmitotic checkpoint complex
Z0042177biological_processnegative regulation of protein catabolic process
Z0042802molecular_functionidentical protein binding
Z0042803molecular_functionprotein homodimerization activity
Z0043066biological_processnegative regulation of apoptotic process
Z0044615cellular_componentnuclear pore nuclear basket
Z0045930biological_processnegative regulation of mitotic cell cycle
Z0048471cellular_componentperinuclear region of cytoplasm
Z0051301biological_processcell division
Z0051660biological_processestablishment of centrosome localization
Z0072686cellular_componentmitotic spindle
Z0090267biological_processpositive regulation of mitotic cell cycle spindle assembly checkpoint
Z1904667biological_processnegative regulation of ubiquitin protein ligase activity
Z1990728cellular_componentmitotic spindle assembly checkpoint MAD1-MAD2 complex
Functional Information from PDB Data
site_idAC1
Number of Residues17
Detailsbinding site for residue AGS A 901
ChainResidue
ASER138
ASER187
AASN300
AILE330
AGLY385
AARG386
AARG389
BASP285
BARG312
ALEU139
AVAL140
ATYR141
AGLY182
ATHR183
AGLY184
ALYS185
ATHR186

site_idAC2
Number of Residues13
Detailsbinding site for residue AGS B 901
ChainResidue
BSER138
BLEU139
BVAL140
BTYR141
BTHR183
BGLY184
BLYS185
BTHR186
BSER187
BASN300
BARG386
BARG389
CARG312

site_idAC3
Number of Residues17
Detailsbinding site for residue AGS C 901
ChainResidue
CSER138
CLEU139
CTYR141
CPRO181
CGLY182
CTHR183
CGLY184
CLYS185
CTHR186
CSER187
CLEU188
CASN300
CPRO322
CGLY385
CARG386
CARG389
DASP311

site_idAC4
Number of Residues13
Detailsbinding site for residue AGS D 901
ChainResidue
DSER138
DLEU139
DVAL140
DGLY182
DTHR183
DGLY184
DLYS185
DTHR186
DSER187
DLEU188
DILE330
DARG386
DARG389

site_idAC5
Number of Residues17
Detailsbinding site for Di-peptide AGS E 901 and ARG E 386
ChainResidue
ELEU139
EVAL140
ETYR141
EGLY182
ETHR183
EGLY184
ELYS185
ETHR186
ESER187
EASP252
EILE330
ESER384
EGLY385
EVAL387
ELEU388
EARG389
ELYS390

site_idAC6
Number of Residues18
Detailsbinding site for Di-peptide AGS E 901 and LYS E 185
ChainResidue
ELEU139
EVAL140
ETYR141
EPRO180
EPRO181
EGLY182
ETHR183
EGLY184
ETHR186
ESER187
ELEU188
ECYS189
EASP252
ETHR298
EILE330
EGLY385
EARG386
EARG389

Functional Information from PROSITE/UniProt
site_idPS00674
Number of Residues20
DetailsAAA AAA-protein family signature. VvILtTSNitekIDvAFvdR
ChainResidueDetails
AVAL293-ARG312

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. TGGGtsDrHIRIWNV
ChainResidueDetails
QTHR373-VAL387

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: N-acetylalanine => ECO:0000269|Ref.12
ChainResidueDetails
ZALA2
BGLY179
CGLY179
DGLY179
EGLY179
FGLY179

site_idSWS_FT_FI2
Number of Residues3
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ZSER6
ZSER130
ZSER185
DMET1
EMET1
FMET1

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:12574116
ChainResidueDetails
ZSER170
ZSER178

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:12574116, ECO:0007744|PubMed:23186163
ChainResidueDetails
ZSER195
QSER92
QSER153
QSER161

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:14657031
ChainResidueDetails
QTHR106

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:15525512
ChainResidueDetails
QTHR157

site_idSWS_FT_FI7
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:21926987
ChainResidueDetails
QLYS485
QLYS490

223166

PDB entries from 2024-07-31

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