6EVF
Structure of E285D S. cerevisiae Fdc1 with prFMN in the hydroxylated form
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0016831 | molecular_function | carboxy-lyase activity |
A | 0033494 | biological_process | ferulate metabolic process |
A | 0046281 | biological_process | cinnamic acid catabolic process |
A | 0046872 | molecular_function | metal ion binding |
A | 1901067 | biological_process | ferulate catabolic process |
B | 0005737 | cellular_component | cytoplasm |
B | 0016831 | molecular_function | carboxy-lyase activity |
B | 0033494 | biological_process | ferulate metabolic process |
B | 0046281 | biological_process | cinnamic acid catabolic process |
B | 0046872 | molecular_function | metal ion binding |
B | 1901067 | biological_process | ferulate catabolic process |
C | 0005737 | cellular_component | cytoplasm |
C | 0016831 | molecular_function | carboxy-lyase activity |
C | 0033494 | biological_process | ferulate metabolic process |
C | 0046281 | biological_process | cinnamic acid catabolic process |
C | 0046872 | molecular_function | metal ion binding |
C | 1901067 | biological_process | ferulate catabolic process |
D | 0005737 | cellular_component | cytoplasm |
D | 0016831 | molecular_function | carboxy-lyase activity |
D | 0033494 | biological_process | ferulate metabolic process |
D | 0046281 | biological_process | cinnamic acid catabolic process |
D | 0046872 | molecular_function | metal ion binding |
D | 1901067 | biological_process | ferulate catabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 25 |
Details | binding site for residue 4LU A 601 |
Chain | Residue |
A | THR155 |
A | SER226 |
A | SER227 |
A | MET228 |
A | PRO229 |
A | GLU236 |
A | PRO319 |
A | ILE330 |
A | LYS394 |
A | MN602 |
A | K603 |
A | ASN170 |
A | HOH723 |
A | HOH750 |
A | HOH781 |
A | HOH794 |
A | HOH814 |
A | HOH825 |
A | SER172 |
A | ILE173 |
A | ALA174 |
A | ARG175 |
A | LEU187 |
A | GLN192 |
A | HIS193 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue MN A 602 |
Chain | Residue |
A | ASN170 |
A | HIS193 |
A | GLU236 |
A | 4LU601 |
A | HOH723 |
A | HOH769 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue K A 603 |
Chain | Residue |
A | TRP171 |
A | VAL225 |
A | SER226 |
A | MET228 |
A | GLU236 |
A | 4LU601 |
site_id | AC4 |
Number of Residues | 26 |
Details | binding site for residue 4LU B 601 |
Chain | Residue |
B | THR155 |
B | ASN170 |
B | SER172 |
B | ILE173 |
B | ALA174 |
B | ARG175 |
B | LEU187 |
B | GLN192 |
B | HIS193 |
B | SER226 |
B | SER227 |
B | MET228 |
B | PRO229 |
B | GLU236 |
B | ASP285 |
B | PRO319 |
B | ILE330 |
B | LYS394 |
B | MN602 |
B | K603 |
B | HOH719 |
B | HOH724 |
B | HOH783 |
B | HOH798 |
B | HOH811 |
B | HOH918 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue MN B 602 |
Chain | Residue |
B | ASN170 |
B | HIS193 |
B | GLU236 |
B | 4LU601 |
B | HOH724 |
B | HOH791 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue K B 603 |
Chain | Residue |
B | TRP171 |
B | VAL225 |
B | SER226 |
B | MET228 |
B | GLU236 |
B | 4LU601 |
site_id | AC7 |
Number of Residues | 27 |
Details | binding site for residue 4LU C 601 |
Chain | Residue |
C | HOH824 |
C | HOH840 |
C | HOH896 |
C | THR155 |
C | ASN170 |
C | SER172 |
C | ILE173 |
C | ALA174 |
C | ARG175 |
C | LEU187 |
C | GLN192 |
C | HIS193 |
C | SER226 |
C | SER227 |
C | MET228 |
C | PRO229 |
C | GLU236 |
C | ASP285 |
C | SER317 |
C | PRO319 |
C | ILE330 |
C | LYS394 |
C | MN602 |
C | K603 |
C | HOH719 |
C | HOH725 |
C | HOH790 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue MN C 602 |
Chain | Residue |
C | ASN170 |
C | HIS193 |
C | GLU236 |
C | 4LU601 |
C | HOH725 |
C | HOH894 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue K C 603 |
Chain | Residue |
C | TRP171 |
C | VAL225 |
C | SER226 |
C | MET228 |
C | GLU236 |
C | 4LU601 |
site_id | AD1 |
Number of Residues | 26 |
Details | binding site for residue 4LU D 601 |
Chain | Residue |
D | THR155 |
D | ASN170 |
D | SER172 |
D | ILE173 |
D | ALA174 |
D | ARG175 |
D | LEU187 |
D | GLN192 |
D | HIS193 |
D | SER226 |
D | SER227 |
D | MET228 |
D | PRO229 |
D | GLU236 |
D | PRO319 |
D | THR326 |
D | ILE330 |
D | LYS394 |
D | MN602 |
D | K603 |
D | HOH714 |
D | HOH720 |
D | HOH734 |
D | HOH758 |
D | HOH807 |
D | HOH854 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue MN D 602 |
Chain | Residue |
D | ASN170 |
D | HIS193 |
D | GLU236 |
D | 4LU601 |
D | HOH714 |
D | HOH782 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue K D 603 |
Chain | Residue |
D | TRP171 |
D | VAL225 |
D | SER226 |
D | MET228 |
D | GLU236 |
D | 4LU601 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Proton donor => ECO:0000250|UniProtKB:A2QHE5, ECO:0000255|HAMAP-Rule:MF_03196, ECO:0000305|PubMed:25862228 |
Chain | Residue | Details |
A | ASP285 | |
B | ASP285 | |
C | ASP285 | |
D | ASP285 |
site_id | SWS_FT_FI2 |
Number of Residues | 20 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03196, ECO:0000269|PubMed:26083754 |
Chain | Residue | Details |
A | ASN170 | |
B | LYS394 | |
C | ASN170 | |
C | GLN192 | |
C | HIS193 | |
C | GLU236 | |
C | LYS394 | |
D | ASN170 | |
D | GLN192 | |
D | HIS193 | |
D | GLU236 | |
A | GLN192 | |
D | LYS394 | |
A | HIS193 | |
A | GLU236 | |
A | LYS394 | |
B | ASN170 | |
B | GLN192 | |
B | HIS193 | |
B | GLU236 |