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6ETT

Crystal structure of KDM4D with tetrazole compound 4

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues6
Detailsbinding site for residue NI A 402
ChainResidue
AHOH652
AHIS192
AGLU194
AHIS280
AHOH602
AHOH623

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 403
ChainResidue
AASN17
AASN262
AHOH608
AHOH654
AHOH870
AHOH870

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 404
ChainResidue
AARG123
ALYS124
ALYS127
AASN128
AHOH777

site_idAC5
Number of Residues7
Detailsbinding site for residue EDO A 405
ChainResidue
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH661
AHOH668

site_idAC6
Number of Residues3
Detailsbinding site for residue EDO A 406
ChainResidue
ATHR252
AARG263
AEDO410

site_idAC7
Number of Residues7
Detailsbinding site for residue EDO A 407
ChainResidue
APHE118
AARG263
AILE264
ATHR265
AHOH537
AHOH599
AHOH735

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 408
ChainResidue
ALYS109
AGLN111
APRO113
AASN132
ATRP185
ALYS186
AHOH566

site_idAC9
Number of Residues9
Detailsbinding site for residue EDO A 409
ChainResidue
ASER80
ATHR87
ACYS168
APHE231
ALYS305
AHOH523
AHOH524
AHOH651
AHOH935

site_idAD1
Number of Residues7
Detailsbinding site for residue EDO A 410
ChainResidue
AGLU122
AARG123
AEDO406
AHOH552
AHOH613
AHOH649
AHOH837

site_idAD2
Number of Residues8
Detailsbinding site for residue EDO A 411
ChainResidue
ATYR179
ATYR181
AGLU194
ASER200
AALA292
AILE293
AASN294
AHOH511

site_idAD3
Number of Residues5
Detailsbinding site for residue EDO A 412
ChainResidue
AGLU27
ALYS33
ATYR37
AHOH509
AHOH929

site_idAD4
Number of Residues6
Detailsbinding site for residue EDO A 413
ChainResidue
AGLU39
ATYR199
ATHR297
APRO298
AARG299
AHOH544

site_idAD5
Number of Residues6
Detailsbinding site for residue EDO A 414
ChainResidue
AASN176
AASP195
AASN294
ATHR318
ASER320
AHOH737

site_idAD6
Number of Residues11
Detailsbinding site for residue SO4 A 415
ChainResidue
AARG60
AGLU61
ATHR62
AASP64
AASN65
AHOH532
AHOH535
AHOH580
AHOH585
AHOH826
AHOH827

site_idAD7
Number of Residues6
Detailsbinding site for residue SO4 A 416
ChainResidue
AASN106
AHOH587
AHOH620
AHOH883
AARG102
AHIS103

site_idAD8
Number of Residues9
Detailsbinding site for residue SO4 A 417
ChainResidue
AMET19
AILE20
ALYS255
AHOH547
AHOH554
AHOH704
AHOH738
AHOH753
AHOH952

site_idAD9
Number of Residues10
Detailsbinding site for residue BXH A 418
ChainResidue
ALEU75
AHIS90
ATYR136
AALA138
ATYR181
APHE189
ALYS245
AHOH602
AHOH690
AHOH691

site_idAE1
Number of Residues2
Detailsbinding site for residue CL A 419
ChainResidue
AASN128
ALYS186

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

220113

PDB entries from 2024-05-22

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