6EJZ
Tryptophan Repressor TrpR from E.coli variant S88Y with Indole-3-acetic acid as ligand
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003677 | molecular_function | DNA binding |
A | 0003700 | molecular_function | DNA-binding transcription factor activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006355 | biological_process | regulation of DNA-templated transcription |
A | 0043565 | molecular_function | sequence-specific DNA binding |
A | 0045892 | biological_process | negative regulation of DNA-templated transcription |
B | 0003677 | molecular_function | DNA binding |
B | 0003700 | molecular_function | DNA-binding transcription factor activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006355 | biological_process | regulation of DNA-templated transcription |
B | 0043565 | molecular_function | sequence-specific DNA binding |
B | 0045892 | biological_process | negative regulation of DNA-templated transcription |
C | 0003677 | molecular_function | DNA binding |
C | 0003700 | molecular_function | DNA-binding transcription factor activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0006355 | biological_process | regulation of DNA-templated transcription |
C | 0043565 | molecular_function | sequence-specific DNA binding |
C | 0045892 | biological_process | negative regulation of DNA-templated transcription |
D | 0003677 | molecular_function | DNA binding |
D | 0003700 | molecular_function | DNA-binding transcription factor activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0006355 | biological_process | regulation of DNA-templated transcription |
D | 0043565 | molecular_function | sequence-specific DNA binding |
D | 0045892 | biological_process | negative regulation of DNA-templated transcription |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | binding site for residue IAC A 201 |
Chain | Residue |
A | ARG54 |
A | ARG84 |
A | GLY85 |
A | TYR88 |
A | HOH307 |
C | LEU41 |
C | MET42 |
C | THR44 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue EDO A 202 |
Chain | Residue |
A | ILE79 |
A | ALA80 |
A | THR81 |
A | GLY78 |
site_id | AC3 |
Number of Residues | 2 |
Details | binding site for residue EDO A 203 |
Chain | Residue |
A | ARG54 |
A | HOH307 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue EDO A 204 |
Chain | Residue |
A | SER8 |
A | HOH320 |
C | LEU89 |
C | ALA92 |
C | ARG97 |
site_id | AC5 |
Number of Residues | 8 |
Details | binding site for residue IAC B 201 |
Chain | Residue |
B | ARG54 |
B | ARG84 |
B | GLY85 |
B | TYR88 |
B | HOH331 |
D | LEU41 |
D | MET42 |
D | THR44 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue EDO B 202 |
Chain | Residue |
B | GLY78 |
B | THR81 |
B | ARG84 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue EDO B 203 |
Chain | Residue |
B | TYR7 |
B | SER8 |
D | ARG97 |
D | GLN98 |
D | GLU101 |
site_id | AC8 |
Number of Residues | 2 |
Details | binding site for residue EDO B 204 |
Chain | Residue |
B | ARG54 |
B | HOH328 |
site_id | AC9 |
Number of Residues | 8 |
Details | binding site for residue IAC C 201 |
Chain | Residue |
A | LEU41 |
A | MET42 |
A | THR44 |
C | ARG54 |
C | ARG84 |
C | GLY85 |
C | TYR88 |
C | HOH325 |
site_id | AD1 |
Number of Residues | 3 |
Details | binding site for residue EDO C 202 |
Chain | Residue |
C | GLY78 |
C | ALA80 |
C | THR81 |
site_id | AD2 |
Number of Residues | 2 |
Details | binding site for residue EDO C 203 |
Chain | Residue |
C | ARG54 |
C | HOH307 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue EDO C 204 |
Chain | Residue |
A | ARG97 |
C | SER8 |
C | ALA9 |
C | ALA10 |
D | GLN31 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue SO4 C 205 |
Chain | Residue |
B | ARG97 |
C | GLN31 |
D | SER8 |
D | ALA9 |
D | HOH333 |
site_id | AD5 |
Number of Residues | 8 |
Details | binding site for residue IAC D 201 |
Chain | Residue |
B | LEU41 |
B | MET42 |
B | THR44 |
D | ARG54 |
D | ARG84 |
D | GLY85 |
D | TYR88 |
D | HOH336 |
site_id | AD6 |
Number of Residues | 4 |
Details | binding site for residue EDO D 202 |
Chain | Residue |
D | GLY78 |
D | ILE79 |
D | ALA80 |
D | THR81 |
site_id | AD7 |
Number of Residues | 3 |
Details | binding site for residue EDO D 203 |
Chain | Residue |
D | THR53 |
D | ARG54 |
D | HOH312 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue EDO D 204 |
Chain | Residue |
A | HIS35 |
C | LYS27 |
D | HIS16 |
D | IAC205 |
site_id | AD9 |
Number of Residues | 13 |
Details | binding site for Di-peptide IAC D 205 and ARG D 15 |
Chain | Residue |
B | PRO45 |
B | GLU49 |
B | HOH316 |
D | MET11 |
D | ALA12 |
D | GLU13 |
D | GLN14 |
D | HIS16 |
D | GLN17 |
D | GLU18 |
D | TRP19 |
D | EDO204 |
D | HOH337 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 92 |
Details | DNA_BIND: |
Chain | Residue | Details |
A | GLN68-ALA91 | |
B | GLN68-ALA91 | |
C | GLN68-ALA91 | |
D | GLN68-ALA91 |