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6EEE

X-ray crystal structure of Pf-M17 in complex with inhibitor (6k) and regulatory zinc ion

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006508biological_processproteolysis
A0019538biological_processprotein metabolic process
A0030145molecular_functionmanganese ion binding
A0046872molecular_functionmetal ion binding
A0070006molecular_functionmetalloaminopeptidase activity
B0005737cellular_componentcytoplasm
B0006508biological_processproteolysis
B0019538biological_processprotein metabolic process
B0030145molecular_functionmanganese ion binding
B0046872molecular_functionmetal ion binding
B0070006molecular_functionmetalloaminopeptidase activity
C0005737cellular_componentcytoplasm
C0006508biological_processproteolysis
C0019538biological_processprotein metabolic process
C0030145molecular_functionmanganese ion binding
C0046872molecular_functionmetal ion binding
C0070006molecular_functionmetalloaminopeptidase activity
D0005737cellular_componentcytoplasm
D0006508biological_processproteolysis
D0019538biological_processprotein metabolic process
D0030145molecular_functionmanganese ion binding
D0046872molecular_functionmetal ion binding
D0070006molecular_functionmetalloaminopeptidase activity
E0005737cellular_componentcytoplasm
E0006508biological_processproteolysis
E0019538biological_processprotein metabolic process
E0030145molecular_functionmanganese ion binding
E0046872molecular_functionmetal ion binding
E0070006molecular_functionmetalloaminopeptidase activity
F0005737cellular_componentcytoplasm
F0006508biological_processproteolysis
F0019538biological_processprotein metabolic process
F0030145molecular_functionmanganese ion binding
F0046872molecular_functionmetal ion binding
F0070006molecular_functionmetalloaminopeptidase activity
G0005737cellular_componentcytoplasm
G0006508biological_processproteolysis
G0019538biological_processprotein metabolic process
G0030145molecular_functionmanganese ion binding
G0046872molecular_functionmetal ion binding
G0070006molecular_functionmetalloaminopeptidase activity
H0005737cellular_componentcytoplasm
H0006508biological_processproteolysis
H0019538biological_processprotein metabolic process
H0030145molecular_functionmanganese ion binding
H0046872molecular_functionmetal ion binding
H0070006molecular_functionmetalloaminopeptidase activity
I0005737cellular_componentcytoplasm
I0006508biological_processproteolysis
I0019538biological_processprotein metabolic process
I0030145molecular_functionmanganese ion binding
I0046872molecular_functionmetal ion binding
I0070006molecular_functionmetalloaminopeptidase activity
J0005737cellular_componentcytoplasm
J0006508biological_processproteolysis
J0019538biological_processprotein metabolic process
J0030145molecular_functionmanganese ion binding
J0046872molecular_functionmetal ion binding
J0070006molecular_functionmetalloaminopeptidase activity
K0005737cellular_componentcytoplasm
K0006508biological_processproteolysis
K0019538biological_processprotein metabolic process
K0030145molecular_functionmanganese ion binding
K0046872molecular_functionmetal ion binding
K0070006molecular_functionmetalloaminopeptidase activity
L0005737cellular_componentcytoplasm
L0006508biological_processproteolysis
L0019538biological_processprotein metabolic process
L0030145molecular_functionmanganese ion binding
L0046872molecular_functionmetal ion binding
L0070006molecular_functionmetalloaminopeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue J4V A 1001
ChainResidue
ALYS374
AGLU461
ALEU487
ATHR488
AGLY489
ALEU492
ASER554
AALA577
APHE583
ACO31002
AZN1003
AASP379
AHOH1138
ALYS386
AGLY390
AMET392
AASP399
AASN457
AASP459
AALA460

site_idAC2
Number of Residues6
Detailsbinding site for residue CO3 A 1002
ChainResidue
ALYS374
AALA460
AGLY462
AARG463
ALEU487
AJ4V1001

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 1003
ChainResidue
AASP379
AASP459
AGLU461
AJ4V1001

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 1004
ChainResidue
AGLU102
ATYR103
AASN104

site_idAC5
Number of Residues6
Detailsbinding site for residue SO4 A 1005
ChainResidue
AGLY126
ALEU219
ASER220
AHOH1204
DLYS164
GLYS111

site_idAC6
Number of Residues6
Detailsbinding site for residue SO4 A 1006
ChainResidue
ASER435
ALYS436
BSER435
BLYS436
CSER435
CLYS436

site_idAC7
Number of Residues6
Detailsbinding site for residue SO4 A 1007
ChainResidue
AASN545
ASER549
AHOH1123
AHOH1163
AHOH1191
BARG586

site_idAC8
Number of Residues4
Detailsbinding site for residue DMS A 1008
ChainResidue
AGLY390
AMET392
AASP394
AHOH1228

site_idAC9
Number of Residues8
Detailsbinding site for residue 1PE A 1009
ChainResidue
ATYR115
AGLY120
AASN122
AGLU124
ATYR270
GTYR115
GASN122
GTYR270

site_idAD1
Number of Residues4
Detailsbinding site for residue 1PE A 1010
ChainResidue
ATYR103
AHIS108
ALYS320
ATYR411

site_idAD2
Number of Residues20
Detailsbinding site for residue J4V B 1001
ChainResidue
BLYS374
BASP379
BLYS386
BGLY390
BMET392
BASP399
BASN457
BASP459
BALA460
BGLU461
BARG463
BLEU487
BTHR488
BGLY489
BLEU492
BALA577
BPHE583
BCO31002
BZN1003
BHOH1140

site_idAD3
Number of Residues5
Detailsbinding site for residue CO3 B 1002
ChainResidue
BALA460
BGLY462
BARG463
BLEU487
BJ4V1001

site_idAD4
Number of Residues4
Detailsbinding site for residue ZN B 1003
ChainResidue
BASP379
BASP459
BGLU461
BJ4V1001

site_idAD5
Number of Residues5
Detailsbinding site for residue SO4 B 1004
ChainResidue
BHOH1157
CARG586
BASN545
BSER549
BHOH1106

site_idAD6
Number of Residues5
Detailsbinding site for residue DMS B 1005
ChainResidue
BILE101
BGLU102
BTYR103
BASN104
B1PE1008

site_idAD7
Number of Residues4
Detailsbinding site for residue DMS B 1006
ChainResidue
BPRO389
BGLY390
BSER391
BMET392

site_idAD8
Number of Residues3
Detailsbinding site for residue DMS B 1007
ChainResidue
BVAL330
BLYS331
BHOH1190

site_idAD9
Number of Residues4
Detailsbinding site for residue 1PE B 1008
ChainResidue
BTYR103
BGLU316
BLYS320
BDMS1005

site_idAE1
Number of Residues19
Detailsbinding site for residue J4V C 1001
ChainResidue
CLYS374
CASP379
CLYS386
CGLY390
CMET392
CASP399
CASN457
CASP459
CGLU461
CLEU487
CTHR488
CGLY489
CLEU492
CSER554
CALA577
CPHE583
CCO31002
CZN1003
CHOH1175

site_idAE2
Number of Residues6
Detailsbinding site for residue CO3 C 1002
ChainResidue
CLYS374
CALA460
CGLY462
CARG463
CLEU487
CJ4V1001

site_idAE3
Number of Residues4
Detailsbinding site for residue ZN C 1003
ChainResidue
CASP379
CASP459
CGLU461
CJ4V1001

site_idAE4
Number of Residues6
Detailsbinding site for residue SO4 C 1004
ChainResidue
AARG586
CASN545
CSER549
CHOH1111
CHOH1138
CHOH1166

site_idAE5
Number of Residues5
Detailsbinding site for residue SO4 C 1005
ChainResidue
CGLU102
CTYR103
CASN104
C1PE1008
CHOH1119

site_idAE6
Number of Residues5
Detailsbinding site for residue SO4 C 1006
ChainResidue
CILE529
CILE530
CASN531
CGLU532
DTYR499

site_idAE7
Number of Residues6
Detailsbinding site for residue 1PE C 1007
ChainResidue
CTYR103
CASN104
CHIS108
CPHE289
CLYS320
CTYR411

site_idAE8
Number of Residues4
Detailsbinding site for residue 1PE C 1008
ChainResidue
CTYR103
CGLU316
CLYS320
CSO41005

site_idAE9
Number of Residues18
Detailsbinding site for residue J4V D 1001
ChainResidue
DLYS374
DASP379
DLYS386
DGLY390
DMET392
DASP399
DASP459
DALA460
DGLU461
DLEU487
DTHR488
DGLY489
DLEU492
DALA577
DPHE583
DCO31002
DZN1003
DHOH1131

site_idAF1
Number of Residues6
Detailsbinding site for residue CO3 D 1002
ChainResidue
DLYS374
DALA460
DGLY462
DARG463
DLEU487
DJ4V1001

site_idAF2
Number of Residues4
Detailsbinding site for residue ZN D 1003
ChainResidue
DASP379
DASP459
DGLU461
DJ4V1001

site_idAF3
Number of Residues4
Detailsbinding site for residue SO4 D 1004
ChainResidue
DILE101
DGLU102
DTYR103
DASN104

site_idAF4
Number of Residues6
Detailsbinding site for residue SO4 D 1005
ChainResidue
DARG586
DHOH1103
DHOH1113
DHOH1146
FASN545
FSER549

site_idAF5
Number of Residues6
Detailsbinding site for residue SO4 D 1006
ChainResidue
DSER435
DLYS436
ESER435
ELYS436
FSER435
FLYS436

site_idAF6
Number of Residues2
Detailsbinding site for residue 1PE D 1007
ChainResidue
DGLU316
DLYS320

site_idAF7
Number of Residues3
Detailsbinding site for residue 1PE D 1008
ChainResidue
DTYR103
DHIS108
DTYR411

site_idAF8
Number of Residues19
Detailsbinding site for residue J4V E 1001
ChainResidue
ELYS374
EASP379
ELYS386
EGLY390
EMET392
ELEU395
EASP399
EASN457
EASP459
EGLU461
ELEU487
ETHR488
EGLY489
ESER554
EALA577
EPHE583
ECO31002
EZN1003
EHOH1150

site_idAF9
Number of Residues6
Detailsbinding site for residue CO3 E 1002
ChainResidue
ELYS374
EALA460
EGLY462
EARG463
ELEU487
EJ4V1001

site_idAG1
Number of Residues4
Detailsbinding site for residue ZN E 1003
ChainResidue
EASP379
EASP459
EGLU461
EJ4V1001

site_idAG2
Number of Residues4
Detailsbinding site for residue SO4 E 1004
ChainResidue
BTYR499
EILE530
EASN531
EGLU532

site_idAG3
Number of Residues3
Detailsbinding site for residue SO4 E 1005
ChainResidue
EGLU102
ETYR103
EASN104

site_idAG4
Number of Residues2
Detailsbinding site for residue EDO E 1006
ChainResidue
ETYR103
ETYR411

site_idAG5
Number of Residues19
Detailsbinding site for residue J4V F 1001
ChainResidue
FLYS374
FASP379
FLYS386
FGLY390
FMET392
FASP399
FASN457
FASP459
FALA460
FGLU461
FLEU487
FTHR488
FGLY489
FLEU492
FALA577
FPHE583
FCO31002
FZN1003
FHOH1125

site_idAG6
Number of Residues6
Detailsbinding site for residue CO3 F 1002
ChainResidue
FLYS374
FALA460
FGLY462
FARG463
FLEU487
FJ4V1001

site_idAG7
Number of Residues4
Detailsbinding site for residue ZN F 1003
ChainResidue
FASP379
FASP459
FGLU461
FJ4V1001

site_idAG8
Number of Residues4
Detailsbinding site for residue SO4 F 1004
ChainResidue
EASN545
ESER549
EHOH1125
FARG586

site_idAG9
Number of Residues3
Detailsbinding site for residue SO4 F 1005
ChainResidue
FTYR103
FASN104
F1PE1009

site_idAH1
Number of Residues3
Detailsbinding site for residue EDO F 1006
ChainResidue
FGLY329
FLYS331
FGLU332

site_idAH2
Number of Residues3
Detailsbinding site for residue EDO F 1007
ChainResidue
FSER549
FVAL551
FLYS552

site_idAH3
Number of Residues3
Detailsbinding site for residue 1PE F 1008
ChainResidue
FTYR103
FASN104
FTYR411

site_idAH4
Number of Residues4
Detailsbinding site for residue 1PE F 1009
ChainResidue
FTYR103
FGLU316
FLYS320
FSO41005

site_idAH5
Number of Residues18
Detailsbinding site for residue J4V G 1001
ChainResidue
GLYS374
GASP379
GLYS386
GGLY390
GMET392
GASP399
GASN457
GASP459
GALA460
GGLU461
GLEU487
GTHR488
GGLY489
GLEU492
GALA577
GPHE583
GCO31002
GZN1003

site_idAH6
Number of Residues6
Detailsbinding site for residue CO3 G 1002
ChainResidue
GLYS374
GALA460
GGLY462
GARG463
GLEU487
GJ4V1001

site_idAH7
Number of Residues4
Detailsbinding site for residue ZN G 1003
ChainResidue
GASP379
GASP459
GGLU461
GJ4V1001

site_idAH8
Number of Residues2
Detailsbinding site for residue SO4 G 1004
ChainResidue
GTYR103
GASN104

site_idAH9
Number of Residues4
Detailsbinding site for residue SO4 G 1005
ChainResidue
GASN545
GSER549
GHOH1126
HARG586

site_idAI1
Number of Residues3
Detailsbinding site for residue DMS G 1006
ChainResidue
GGLY390
GSER391
GMET392

site_idAI2
Number of Residues3
Detailsbinding site for residue EDO G 1007
ChainResidue
GARG251
GLYS253
GTYR304

site_idAI3
Number of Residues3
Detailsbinding site for residue 1PE G 1008
ChainResidue
GTYR103
GHIS108
GTYR411

site_idAI4
Number of Residues4
Detailsbinding site for residue 1PE G 1009
ChainResidue
GTYR103
GGLU316
GLYS320
GHOH1239

site_idAI5
Number of Residues21
Detailsbinding site for residue J4V H 1001
ChainResidue
HLYS374
HASP379
HLYS386
HGLY390
HMET392
HASP399
HASN457
HASP459
HALA460
HGLU461
HARG463
HLEU487
HTHR488
HGLY489
HLEU492
HSER554
HALA577
HPHE583
HCO31002
HZN1003
HHOH1133

site_idAI6
Number of Residues6
Detailsbinding site for residue CO3 H 1002
ChainResidue
HLYS374
HALA460
HGLY462
HARG463
HLEU487
HJ4V1001

site_idAI7
Number of Residues4
Detailsbinding site for residue ZN H 1003
ChainResidue
HASP379
HASP459
HGLU461
HJ4V1001

site_idAI8
Number of Residues6
Detailsbinding site for residue SO4 H 1004
ChainResidue
GSER435
GLYS436
HSER435
HLYS436
ISER435
ILYS436

site_idAI9
Number of Residues4
Detailsbinding site for residue SO4 H 1005
ChainResidue
HILE101
HGLU102
HTYR103
HASN104

site_idAJ1
Number of Residues3
Detailsbinding site for residue SO4 H 1006
ChainResidue
HASN545
HSER549
IARG586

site_idAJ2
Number of Residues7
Detailsbinding site for residue 2PE H 1007
ChainResidue
BTYR103
BHIS108
BLYS320
BTYR411
HTYR103
HGLU316
HLYS320

site_idAJ3
Number of Residues3
Detailsbinding site for residue 1PE H 1008
ChainResidue
HLYS320
HTYR411
HHOH1217

site_idAJ4
Number of Residues2
Detailsbinding site for residue EDO H 1009
ChainResidue
HLEU601
HASP603

site_idAJ5
Number of Residues2
Detailsbinding site for residue DMS H 1010
ChainResidue
HTYR499
KASN531

site_idAJ6
Number of Residues20
Detailsbinding site for residue J4V I 1001
ChainResidue
ILYS374
IASP379
ILYS386
IGLY390
IMET392
IASP399
IASN457
IASP459
IALA460
IGLU461
ILEU487
ITHR488
IGLY489
ILEU492
IALA577
IPHE583
ICO31002
IZN1003
IHOH1143
JEDO1006

site_idAJ7
Number of Residues6
Detailsbinding site for residue CO3 I 1002
ChainResidue
ILYS374
IALA460
IGLY462
IARG463
ILEU487
IJ4V1001

site_idAJ8
Number of Residues4
Detailsbinding site for residue ZN I 1003
ChainResidue
IASP379
IASP459
IGLU461
IJ4V1001

site_idAJ9
Number of Residues7
Detailsbinding site for residue SO4 I 1004
ChainResidue
GARG586
IASN545
ISER549
IHOH1134
IHOH1145
IHOH1156
IHOH1165

site_idAK1
Number of Residues5
Detailsbinding site for residue SO4 I 1005
ChainResidue
IGLU102
ITYR103
IASN104
I1PE1008
IHOH1251

site_idAK2
Number of Residues5
Detailsbinding site for residue SO4 I 1006
ChainResidue
IALA388
IPRO389
IGLY390
ISER391
IMET392

site_idAK3
Number of Residues4
Detailsbinding site for residue EDO I 1007
ChainResidue
IASN531
IGLU532
IHOH1171
JTYR499

site_idAK4
Number of Residues4
Detailsbinding site for residue 1PE I 1008
ChainResidue
ITYR103
IGLU316
ILYS320
ISO41005

site_idAK5
Number of Residues6
Detailsbinding site for residue 1PE I 1009
ChainResidue
ITYR103
IASN104
IHIS108
IPHE289
ILYS320
ITYR411

site_idAK6
Number of Residues19
Detailsbinding site for residue J4V J 1001
ChainResidue
JLYS374
JASP379
JLYS386
JGLY390
JMET392
JASP399
JASN457
JASP459
JALA460
JGLU461
JLEU487
JTHR488
JGLY489
JLEU492
JALA577
JPHE583
JCO31002
JZN1003
JHOH1156

site_idAK7
Number of Residues6
Detailsbinding site for residue CO3 J 1002
ChainResidue
JLYS374
JALA460
JGLY462
JARG463
JLEU487
JJ4V1001

site_idAK8
Number of Residues4
Detailsbinding site for residue ZN J 1003
ChainResidue
JASP379
JASP459
JGLU461
JJ4V1001

site_idAK9
Number of Residues2
Detailsbinding site for residue SO4 J 1004
ChainResidue
JTYR103
JASN104

site_idAL1
Number of Residues5
Detailsbinding site for residue SO4 J 1005
ChainResidue
JASN545
JSER549
JHOH1117
JHOH1196
KARG586

site_idAL2
Number of Residues3
Detailsbinding site for residue EDO J 1006
ChainResidue
IJ4V1001
JSER550
JLYS552

site_idAL3
Number of Residues1
Detailsbinding site for residue EDO J 1007
ChainResidue
JVAL551

site_idAL4
Number of Residues1
Detailsbinding site for residue EDO J 1008
ChainResidue
JSER517

site_idAL5
Number of Residues3
Detailsbinding site for residue 1PE J 1009
ChainResidue
JTYR103
JASN104
JTYR411

site_idAL6
Number of Residues3
Detailsbinding site for residue 1PE J 1010
ChainResidue
JTYR103
JGLU316
JLYS320

site_idAL7
Number of Residues5
Detailsbinding site for residue 1PE J 1011
ChainResidue
JLYS451
JASP543
JGLU564
JGLN567
KSER254

site_idAL8
Number of Residues20
Detailsbinding site for residue J4V K 1001
ChainResidue
KLYS374
KASP379
KLYS386
KGLY390
KMET392
KASP399
KASN457
KASP459
KALA460
KGLU461
KARG463
KLEU487
KTHR488
KGLY489
KLEU492
KALA577
KPHE583
KCO31002
KZN1003
KHOH1163

site_idAL9
Number of Residues7
Detailsbinding site for residue CO3 K 1002
ChainResidue
KLYS374
KALA460
KGLU461
KGLY462
KARG463
KLEU487
KJ4V1001

site_idAM1
Number of Residues4
Detailsbinding site for residue ZN K 1003
ChainResidue
KASP379
KASP459
KGLU461
KJ4V1001

site_idAM2
Number of Residues6
Detailsbinding site for residue SO4 K 1004
ChainResidue
JSER435
JLYS436
KSER435
KLYS436
LSER435
LLYS436

site_idAM3
Number of Residues5
Detailsbinding site for residue SO4 K 1005
ChainResidue
KILE101
KTYR103
KASN104
K1PE1012
KHOH1162

site_idAM4
Number of Residues3
Detailsbinding site for residue SO4 K 1006
ChainResidue
KGLY126
KLEU219
KSER220

site_idAM5
Number of Residues6
Detailsbinding site for residue SO4 K 1007
ChainResidue
KASN545
KSER549
KHOH1141
KHOH1205
KHOH1215
LARG586

site_idAM6
Number of Residues2
Detailsbinding site for residue EDO K 1008
ChainResidue
KHIS108
KARG285

site_idAM7
Number of Residues4
Detailsbinding site for residue EDO K 1009
ChainResidue
IHIS174
KSER172
KLYS173
KHIS174

site_idAM8
Number of Residues2
Detailsbinding site for residue EDO K 1010
ChainResidue
KHIS215
KGLU262

site_idAM9
Number of Residues4
Detailsbinding site for residue EDO K 1011
ChainResidue
KGLY329
KVAL330
KLYS331
KGLU332

site_idAN1
Number of Residues5
Detailsbinding site for residue 1PE K 1012
ChainResidue
KTYR103
KGLU316
KLYS320
KSO41005
K1PE1013

site_idAN2
Number of Residues6
Detailsbinding site for residue 1PE K 1013
ChainResidue
KTYR103
KASN104
KHIS108
KTYR411
K1PE1012
KHOH1135

site_idAN3
Number of Residues19
Detailsbinding site for residue J4V L 1001
ChainResidue
LLYS374
LASP379
LLYS386
LGLY390
LMET392
LASP399
LASN457
LASP459
LALA460
LGLU461
LLEU487
LTHR488
LGLY489
LLEU492
LALA577
LPHE583
LCO31002
LZN1003
LHOH1115

site_idAN4
Number of Residues5
Detailsbinding site for residue CO3 L 1002
ChainResidue
LALA460
LGLY462
LARG463
LLEU487
LJ4V1001

site_idAN5
Number of Residues5
Detailsbinding site for residue ZN L 1003
ChainResidue
LASP379
LLYS386
LASP459
LGLU461
LJ4V1001

site_idAN6
Number of Residues4
Detailsbinding site for residue SO4 L 1004
ChainResidue
JARG586
LASN545
LSER549
LHOH1159

site_idAN7
Number of Residues3
Detailsbinding site for residue SO4 L 1005
ChainResidue
LGLU102
LTYR103
LASN104

site_idAN8
Number of Residues6
Detailsbinding site for residue EDO L 1006
ChainResidue
GTYR499
LILE529
LILE530
LASN531
LGLU532
LHOH1103

site_idAN9
Number of Residues6
Detailsbinding site for residue 1PE L 1007
ChainResidue
JSER254
LASN449
LLYS451
LASP543
LGLU564
LGLN567

site_idAO1
Number of Residues3
Detailsbinding site for residue 1PE L 1008
ChainResidue
LTYR103
LGLU316
LLYS320

site_idAO2
Number of Residues5
Detailsbinding site for residue 1PE L 1009
ChainResidue
LTYR103
LHIS108
LLYS320
LTYR411
LHOH1109

site_idAO3
Number of Residues3
Detailsbinding site for residue 1PE L 1010
ChainResidue
LSER549
LSER550
LLYS552

Functional Information from PROSITE/UniProt
site_idPS00631
Number of Residues8
DetailsCYTOSOL_AP Cytosol aminopeptidase signature. NTDAEGRL
ChainResidueDetails
AASN457-LEU464

223790

PDB entries from 2024-08-14

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