| Chain | GOid | namespace | contents |
| A | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| A | 0000165 | biological_process | MAPK cascade |
| A | 0000400 | molecular_function | four-way junction DNA binding |
| A | 0000403 | molecular_function | Y-form DNA binding |
| A | 0000781 | cellular_component | chromosome, telomeric region |
| A | 0000785 | cellular_component | chromatin |
| A | 0000976 | molecular_function | transcription cis-regulatory region binding |
| A | 0001933 | biological_process | negative regulation of protein phosphorylation |
| A | 0002076 | biological_process | osteoblast development |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003682 | molecular_function | chromatin binding |
| A | 0003690 | molecular_function | double-stranded DNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005788 | cellular_component | endoplasmic reticulum lumen |
| A | 0005829 | cellular_component | cytosol |
| A | 0006281 | biological_process | DNA repair |
| A | 0006325 | biological_process | chromatin organization |
| A | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| A | 0006974 | biological_process | DNA damage response |
| A | 0008285 | biological_process | negative regulation of cell population proliferation |
| A | 0009411 | biological_process | response to UV |
| A | 0010332 | biological_process | response to gamma radiation |
| A | 0016363 | cellular_component | nuclear matrix |
| A | 0017053 | cellular_component | transcription repressor complex |
| A | 0030511 | biological_process | positive regulation of transforming growth factor beta receptor signaling pathway |
| A | 0030674 | molecular_function | protein-macromolecule adaptor activity |
| A | 0032154 | cellular_component | cleavage furrow |
| A | 0032991 | cellular_component | protein-containing complex |
| A | 0035097 | cellular_component | histone methyltransferase complex |
| A | 0043433 | biological_process | negative regulation of DNA-binding transcription factor activity |
| A | 0044665 | cellular_component | MLL1/2 complex |
| A | 0045064 | biological_process | T-helper 2 cell differentiation |
| A | 0045668 | biological_process | negative regulation of osteoblast differentiation |
| A | 0045736 | biological_process | negative regulation of cyclin-dependent protein serine/threonine kinase activity |
| A | 0045786 | biological_process | negative regulation of cell cycle |
| A | 0045815 | biological_process | transcription initiation-coupled chromatin remodeling |
| A | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| A | 0045944 | biological_process | positive regulation of transcription by RNA polymerase II |
| A | 0046329 | biological_process | negative regulation of JNK cascade |
| A | 0051219 | molecular_function | phosphoprotein binding |
| A | 0070412 | molecular_function | R-SMAD binding |
| A | 0071339 | cellular_component | MLL1 complex |
