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6DZI

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
40003735molecular_functionstructural constituent of ribosome
40005840cellular_componentribosome
40006412biological_processtranslation
50003723molecular_functionRNA binding
50003735molecular_functionstructural constituent of ribosome
50005840cellular_componentribosome
50006412biological_processtranslation
50019843molecular_functionrRNA binding
50022627cellular_componentcytosolic small ribosomal subunit
51990904cellular_componentribonucleoprotein complex
60003723molecular_functionRNA binding
60003735molecular_functionstructural constituent of ribosome
60005840cellular_componentribosome
60006412biological_processtranslation
60015935cellular_componentsmall ribosomal subunit
70003723molecular_functionRNA binding
70003735molecular_functionstructural constituent of ribosome
70005829cellular_componentcytosol
70005840cellular_componentribosome
70006412biological_processtranslation
70015935cellular_componentsmall ribosomal subunit
70019843molecular_functionrRNA binding
70070181molecular_functionsmall ribosomal subunit rRNA binding
71990904cellular_componentribonucleoprotein complex
80003735molecular_functionstructural constituent of ribosome
80005840cellular_componentribosome
80006412biological_processtranslation
80015935cellular_componentsmall ribosomal subunit
90003723molecular_functionRNA binding
90003735molecular_functionstructural constituent of ribosome
90005840cellular_componentribosome
90006412biological_processtranslation
90015935cellular_componentsmall ribosomal subunit
90019843molecular_functionrRNA binding
91990904cellular_componentribonucleoprotein complex
C0002181biological_processcytoplasmic translation
C0003723molecular_functionRNA binding
C0003735molecular_functionstructural constituent of ribosome
C0005840cellular_componentribosome
C0006412biological_processtranslation
C0015934cellular_componentlarge ribosomal subunit
C0016740molecular_functiontransferase activity
C0019843molecular_functionrRNA binding
C0022625cellular_componentcytosolic large ribosomal subunit
C1990904cellular_componentribonucleoprotein complex
D0003723molecular_functionRNA binding
D0003735molecular_functionstructural constituent of ribosome
D0005840cellular_componentribosome
D0006412biological_processtranslation
D0019843molecular_functionrRNA binding
D0022625cellular_componentcytosolic large ribosomal subunit
D1990904cellular_componentribonucleoprotein complex
E0003723molecular_functionRNA binding
E0003735molecular_functionstructural constituent of ribosome
E0005840cellular_componentribosome
E0006412biological_processtranslation
E0019843molecular_functionrRNA binding
E1990904cellular_componentribonucleoprotein complex
F0000049molecular_functiontRNA binding
F0003723molecular_functionRNA binding
F0003735molecular_functionstructural constituent of ribosome
F0005840cellular_componentribosome
F0006412biological_processtranslation
F0019843molecular_functionrRNA binding
F0022625cellular_componentcytosolic large ribosomal subunit
F1990904cellular_componentribonucleoprotein complex
G0002181biological_processcytoplasmic translation
G0003723molecular_functionRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0005840cellular_componentribosome
G0006412biological_processtranslation
G0019843molecular_functionrRNA binding
G0022625cellular_componentcytosolic large ribosomal subunit
G1990904cellular_componentribonucleoprotein complex
H0003723molecular_functionRNA binding
H0003735molecular_functionstructural constituent of ribosome
H0005840cellular_componentribosome
H0006412biological_processtranslation
H0019843molecular_functionrRNA binding
H0022625cellular_componentcytosolic large ribosomal subunit
H1990904cellular_componentribonucleoprotein complex
I0003735molecular_functionstructural constituent of ribosome
I0006412biological_processtranslation
I0015934cellular_componentlarge ribosomal subunit
J0003723molecular_functionRNA binding
J0003735molecular_functionstructural constituent of ribosome
J0005840cellular_componentribosome
J0006412biological_processtranslation
J0019843molecular_functionrRNA binding
J0070180molecular_functionlarge ribosomal subunit rRNA binding
J1990904cellular_componentribonucleoprotein complex
K0003729molecular_functionmRNA binding
K0003735molecular_functionstructural constituent of ribosome
K0005737cellular_componentcytoplasm
K0005840cellular_componentribosome
K0006412biological_processtranslation
K0017148biological_processnegative regulation of translation
K0022625cellular_componentcytosolic large ribosomal subunit
K0043229cellular_componentintracellular organelle
K1990904cellular_componentribonucleoprotein complex
L0003723molecular_functionRNA binding
L0003735molecular_functionstructural constituent of ribosome
L0005840cellular_componentribosome
L0006412biological_processtranslation
L0015934cellular_componentlarge ribosomal subunit
L0019843molecular_functionrRNA binding
L0022625cellular_componentcytosolic large ribosomal subunit
L0070180molecular_functionlarge ribosomal subunit rRNA binding
L1990904cellular_componentribonucleoprotein complex
M0003723molecular_functionRNA binding
M0003735molecular_functionstructural constituent of ribosome
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0015934cellular_componentlarge ribosomal subunit
M0019843molecular_functionrRNA binding
M1990904cellular_componentribonucleoprotein complex
N0000049molecular_functiontRNA binding
N0003723molecular_functionRNA binding
N0003735molecular_functionstructural constituent of ribosome
N0005840cellular_componentribosome
N0006412biological_processtranslation
N0019843molecular_functionrRNA binding
N0022625cellular_componentcytosolic large ribosomal subunit
N1990904cellular_componentribonucleoprotein complex
O0003735molecular_functionstructural constituent of ribosome
O0005840cellular_componentribosome
O0006412biological_processtranslation
P0003723molecular_functionRNA binding
P0003735molecular_functionstructural constituent of ribosome
P0005737cellular_componentcytoplasm
P0005840cellular_componentribosome
P0006412biological_processtranslation
P0008097molecular_function5S rRNA binding
P0019843molecular_functionrRNA binding
P0022625cellular_componentcytosolic large ribosomal subunit
P0043229cellular_componentintracellular organelle
P1990904cellular_componentribonucleoprotein complex
Q0003735molecular_functionstructural constituent of ribosome
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
Q0022625cellular_componentcytosolic large ribosomal subunit
Q1990904cellular_componentribonucleoprotein complex
R0003723molecular_functionRNA binding
R0003735molecular_functionstructural constituent of ribosome
R0005840cellular_componentribosome
R0006412biological_processtranslation
R0019843molecular_functionrRNA binding
R0022625cellular_componentcytosolic large ribosomal subunit
R1990904cellular_componentribonucleoprotein complex
S0003723molecular_functionRNA binding
S0003735molecular_functionstructural constituent of ribosome
S0005737cellular_componentcytoplasm
S0005840cellular_componentribosome
S0006412biological_processtranslation
S0019843molecular_functionrRNA binding
S0043229cellular_componentintracellular organelle
S1990904cellular_componentribonucleoprotein complex
T0003735molecular_functionstructural constituent of ribosome
T0005840cellular_componentribosome
T0006412biological_processtranslation
T0015934cellular_componentlarge ribosomal subunit
U0003723molecular_functionRNA binding
U0003735molecular_functionstructural constituent of ribosome
U0005840cellular_componentribosome
U0006412biological_processtranslation
U0019843molecular_functionrRNA binding
U0022625cellular_componentcytosolic large ribosomal subunit
U1990904cellular_componentribonucleoprotein complex
V0003723molecular_functionRNA binding
V0003735molecular_functionstructural constituent of ribosome
V0005840cellular_componentribosome
V0006412biological_processtranslation
V0019843molecular_functionrRNA binding
V1990904cellular_componentribonucleoprotein complex
W0003735molecular_functionstructural constituent of ribosome
W0005840cellular_componentribosome
W0006412biological_processtranslation
W0008097molecular_function5S rRNA binding
X0003735molecular_functionstructural constituent of ribosome
X0005840cellular_componentribosome
X0006412biological_processtranslation
X0022625cellular_componentcytosolic large ribosomal subunit
X1990904cellular_componentribonucleoprotein complex
Y0044238biological_processprimary metabolic process
Z0003735molecular_functionstructural constituent of ribosome
Z0005840cellular_componentribosome
Z0006412biological_processtranslation
a0003735molecular_functionstructural constituent of ribosome
a0005840cellular_componentribosome
a0006412biological_processtranslation
a0015934cellular_componentlarge ribosomal subunit
a0022625cellular_componentcytosolic large ribosomal subunit
a1990904cellular_componentribonucleoprotein complex
b0003735molecular_functionstructural constituent of ribosome
b0005840cellular_componentribosome
b0006412biological_processtranslation
b0015934cellular_componentlarge ribosomal subunit
b1990904cellular_componentribonucleoprotein complex
c0003735molecular_functionstructural constituent of ribosome
c0005737cellular_componentcytoplasm
c0005840cellular_componentribosome
c0006412biological_processtranslation
c0022625cellular_componentcytosolic large ribosomal subunit
c0043229cellular_componentintracellular organelle
c1990904cellular_componentribonucleoprotein complex
d0003735molecular_functionstructural constituent of ribosome
d0005840cellular_componentribosome
d0006412biological_processtranslation
d1990904cellular_componentribonucleoprotein complex
e0003735molecular_functionstructural constituent of ribosome
e0005840cellular_componentribosome
e0006412biological_processtranslation
e0022625cellular_componentcytosolic large ribosomal subunit
e1990904cellular_componentribonucleoprotein complex
f0003735molecular_functionstructural constituent of ribosome
f0005737cellular_componentcytoplasm
f0005840cellular_componentribosome
f0006412biological_processtranslation
f0043229cellular_componentintracellular organelle
f1990904cellular_componentribonucleoprotein complex
g0003735molecular_functionstructural constituent of ribosome
g0005840cellular_componentribosome
g0006412biological_processtranslation
g1990904cellular_componentribonucleoprotein complex
k0003676molecular_functionnucleic acid binding
k0003723molecular_functionRNA binding
k0003735molecular_functionstructural constituent of ribosome
k0006412biological_processtranslation
l0003723molecular_functionRNA binding
l0003735molecular_functionstructural constituent of ribosome
l0005840cellular_componentribosome
l0006412biological_processtranslation
l0015935cellular_componentsmall ribosomal subunit
l0019843molecular_functionrRNA binding
l0042274biological_processribosomal small subunit biogenesis
l1990904cellular_componentribonucleoprotein complex
m0003723molecular_functionRNA binding
m0003735molecular_functionstructural constituent of ribosome
m0005840cellular_componentribosome
m0006412biological_processtranslation
m0015935cellular_componentsmall ribosomal subunit
n0003735molecular_functionstructural constituent of ribosome
n0005840cellular_componentribosome
n0006412biological_processtranslation
n0019843molecular_functionrRNA binding
p0000028biological_processribosomal small subunit assembly
p0000049molecular_functiontRNA binding
p0003723molecular_functionRNA binding
p0003729molecular_functionmRNA binding
p0003735molecular_functionstructural constituent of ribosome
p0005840cellular_componentribosome
p0006412biological_processtranslation
p0015935cellular_componentsmall ribosomal subunit
p0019843molecular_functionrRNA binding
p0022627cellular_componentcytosolic small ribosomal subunit
p1990904cellular_componentribonucleoprotein complex
q0003723molecular_functionRNA binding
q0003735molecular_functionstructural constituent of ribosome
q0005737cellular_componentcytoplasm
q0005840cellular_componentribosome
q0006412biological_processtranslation
q0019843molecular_functionrRNA binding
q0022627cellular_componentcytosolic small ribosomal subunit
q0043229cellular_componentintracellular organelle
q1990904cellular_componentribonucleoprotein complex
r0003723molecular_functionRNA binding
r0003735molecular_functionstructural constituent of ribosome
r0005840cellular_componentribosome
r0006412biological_processtranslation
r0019843molecular_functionrRNA binding
r0070181molecular_functionsmall ribosomal subunit rRNA binding
r1990904cellular_componentribonucleoprotein complex
s0000049molecular_functiontRNA binding
s0003723molecular_functionRNA binding
s0003735molecular_functionstructural constituent of ribosome
s0005840cellular_componentribosome
s0006412biological_processtranslation
s0015935cellular_componentsmall ribosomal subunit
s1990904cellular_componentribonucleoprotein complex
t0003735molecular_functionstructural constituent of ribosome
t0005840cellular_componentribosome
t0006412biological_processtranslation
u0000049molecular_functiontRNA binding
u0003723molecular_functionRNA binding
u0003735molecular_functionstructural constituent of ribosome
u0005840cellular_componentribosome
u0006412biological_processtranslation
u0015935cellular_componentsmall ribosomal subunit
u0019843molecular_functionrRNA binding
u1990904cellular_componentribonucleoprotein complex
v0000049molecular_functiontRNA binding
v0003676molecular_functionnucleic acid binding
v0003723molecular_functionRNA binding
v0003735molecular_functionstructural constituent of ribosome
v0005829cellular_componentcytosol
v0005840cellular_componentribosome
v0006412biological_processtranslation
v0015935cellular_componentsmall ribosomal subunit
v0019843molecular_functionrRNA binding
v1990904cellular_componentribonucleoprotein complex
x0003723molecular_functionRNA binding
x0003735molecular_functionstructural constituent of ribosome
x0005737cellular_componentcytoplasm
x0005840cellular_componentribosome
x0006412biological_processtranslation
x0019843molecular_functionrRNA binding
x0022627cellular_componentcytosolic small ribosomal subunit
x0043229cellular_componentintracellular organelle
x1990904cellular_componentribonucleoprotein complex
y0003735molecular_functionstructural constituent of ribosome
y0005840cellular_componentribosome
y0006412biological_processtranslation
z0003735molecular_functionstructural constituent of ribosome
z0005840cellular_componentribosome
z0006412biological_processtranslation
Functional Information from PROSITE/UniProt
site_idPS00784
Number of Residues20
DetailsRIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpnnrrRarvh.GFrlR
ChainResidueDetails
dLYS5-ARG24

site_idPS00464
Number of Residues25
DetailsRIBOSOMAL_L22 Ribosomal protein L22 signature. KriRpRAqGRafrirkrtSHITViV
ChainResidueDetails
TLYS90-VAL114

site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. QGlRHrrGlpVRGQ
ChainResidueDetails
vGLN88-GLN101

site_idPS00586
Number of Residues12
DetailsRIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. KRgGKVWINIFP
ChainResidueDetails
NLYS59-PRO70

site_idPS00701
Number of Residues12
DetailsRIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGsGKGspewW
ChainResidueDetails
NARG82-TRP93

site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. VtrtGAsvvGPVpLPT
ChainResidueDetails
sVAL29-THR44

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
ChainResidueDetails
uLYS43-ARG50

site_idPS01109
Number of Residues35
DetailsRIBOSOMAL_L10 Ribosomal protein L10 signature. KatAvadIAeqfkastatVvtEyrGLTVaNLaeLR
ChainResidueDetails
ILYS6-ARG40

site_idPS00828
Number of Residues26
DetailsRIBOSOMAL_L36 Ribosomal protein L36 signature. CdkCrvIrRhgrVmViCsdp.RHkQrQ
ChainResidueDetails
fCYS11-GLN36

site_idPS00548
Number of Residues35
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. SRsefyreGrVplHt..LradIDyglyeakTtfGriG
ChainResidueDetails
kSER163-GLY197

site_idPS01143
Number of Residues22
DetailsRIBOSOMAL_L31 Ribosomal protein L31 signature. DVtsdsHPFWTgsarhidsa....GQ
ChainResidueDetails
gASP52-GLN84

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. LteHLkvhKhDhhSrrgLllLvgrrrrLlkY
ChainResidueDetails
xLEU39-TYR69

site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. IrSLqaA.GLeVgtisDvTPqPHN
ChainResidueDetails
tILE106-ASN128

site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtvkerrra.DGsyikFdeNaaVI
ChainResidueDetails
LALA60-ILE86

site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGVVmNPvD
ChainResidueDetails
CPRO219-ASP230

site_idPS01108
Number of Residues18
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. GDtVlVIsGkdKGak.GkV
ChainResidueDetails
VGLY6-VAL23

site_idPS01015
Number of Residues16
DetailsRIBOSOMAL_L19 Ribosomal protein L19 signature. VlTrGDVR.RAKLYYLR
ChainResidueDetails
QVAL85-ARG100

site_idPS00211
Number of Residues15
DetailsABC_TRANSPORTER_1 ABC transporters family signature. IAVGEARKLGIPVIA
ChainResidueDetails
8ILE171-ALA185

site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. MkQLLDSGAHFG
ChainResidueDetails
8MET6-GLY17

site_idPS00831
Number of Residues15
DetailsRIBOSOMAL_L27 Ribosomal protein L27 signature. GeILvRQRGthfhpG
ChainResidueDetails
XGLY34-GLY48

site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. DGRkhvpvfVteamVGhkLGEFapT
ChainResidueDetails
6ASP53-THR77

site_idPS00050
Number of Residues16
DetailsRIBOSOMAL_L23 Ribosomal protein L23 signature. KRAIVKLAagskpidL
ChainResidueDetails
ULYS80-LEU95

site_idPS00936
Number of Residues27
DetailsRIBOSOMAL_L35 Ribosomal protein L35 signature. KTHsGAsKRFrrtgtgkivrqkanr.RH
ChainResidueDetails
eLYS5-HIS31

site_idPS00634
Number of Residues33
DetailsRIBOSOMAL_L30 Ribosomal protein L30 signature. SLrtLgLkKirQsVvrednaqtrgLIntVhhLV
ChainResidueDetails
aSER22-VAL54

site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRaglArTrrmARqLV
ChainResidueDetails
lLEU89-VAL113

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GvaIISTSsGLLtdrqAA
ChainResidueDetails
qGLY102-ALA119

site_idPS01169
Number of Residues23
DetailsRIBOSOMAL_L21 Ribosomal protein L21 signature. IrihKfknKTgyhkrqGHRQqlT
ChainResidueDetails
SILE73-THR95

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGpsGQagAlrlAiARAL
ChainResidueDetails
4GLY89-LEU107

site_idPS00359
Number of Residues15
DetailsRIBOSOMAL_L11 Ribosomal protein L11 signature. KiIaGTarSMGiTV.E
ChainResidueDetails
JLYS128-GLU142

site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfsFtAlvIVGDgk.GmVGvGygkak.EVpa.AI
ChainResidueDetails
mGLY53-ILE85

site_idPS00579
Number of Residues15
DetailsRIBOSOMAL_L29 Ribosomal protein L29 signature. NNRRLRtVRQEIARV
ChainResidueDetails
ZASN43-VAL57

site_idPS00057
Number of Residues24
DetailsRIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.VavLrtFLSEr.GKIrsrHV
ChainResidueDetails
rILE32-VAL55

site_idPS00937
Number of Residues17
DetailsRIBOSOMAL_L20 Ribosomal protein L20 signature. KgefRkLWISRINaaaR
ChainResidueDetails
RLYS54-ARG70

site_idPS00525
Number of Residues9
DetailsRIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PDpYKGKGV
ChainResidueDetails
GPRO155-VAL163

site_idPS00582
Number of Residues20
DetailsRIBOSOMAL_L33 Ribosomal protein L33 signature. YvTrKNrrndPdrIVlrKYD
ChainResidueDetails
cTYR21-ASP40

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDrVsLmEtRPLS
ChainResidueDetails
5GLY71-SER83

site_idPS00216
Number of Residues18
DetailsSUGAR_TRANSPORT_1 Sugar transport proteins signature 1. TVDKVDIWGRRrlayeiA
ChainResidueDetails
nTHR36-ALA53

site_idPS01048
Number of Residues10
DetailsRIBOSOMAL_S6 Ribosomal protein S6 signature. GrRRLAYeIA
ChainResidueDetails
nGLY44-ALA53

site_idPS00475
Number of Residues31
DetailsRIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGdGkLtvk..VdVtankFSgsAreaItaaG
ChainResidueDetails
MLYS111-GLY141

site_idPS00651
Number of Residues28
DetailsRIBOSOMAL_L9 Ribosomal protein L9 signature. GaaGdtveVkdGYgrNYLlprglAivaS
ChainResidueDetails
HGLY13-SER40

site_idPS01167
Number of Residues23
DetailsRIBOSOMAL_L17 Ribosomal protein L17 signature. IkTTepKaRalrpyaEkLIThAK
ChainResidueDetails
OILE34-LYS56

site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. SqLvtqLVnkvlleGKKslaerIVygA
ChainResidueDetails
pSER20-ALA46

site_idPS00732
Number of Residues10
DetailsRIBOSOMAL_S16 Ribosomal protein S16 signature. VkIKLTRLGK
ChainResidueDetails
zVAL3-LYS12

site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FsdgayvDvtGtSkGKGfaGtmkR
ChainResidueDetails
DPHE106-ARG129

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsCROSSLNK: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup) => ECO:0000269|PubMed:20094657
ChainResidueDetails
JLYS101

218853

PDB entries from 2024-04-24

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