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6DXT

Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with 3-(5-phenyl-1,3,4-oxadiazol-2-yl)propanoate

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
B0008270molecular_functionzinc ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue HHY A 701
ChainResidue
ATRP209
AGLY220
AARG221
ATYR259
ATYR261
AHOH837
BARG238

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 704
ChainResidue
ACYS219
AHIS232
ACYS199
ACYS202

site_idAC3
Number of Residues7
Detailsbinding site for residue EDO B 301
ChainResidue
AHOH831
BLEU186
BASP187
BASN188
BPRO189
BASP214
BHOH445

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO B 302
ChainResidue
BARG205
BASN207
BLEU208
BLEU248

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 303
ChainResidue
BCYS199
BCYS202
BCYS219
BHIS232

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues216
DetailsZinc finger: {"description":"UBP-type; degenerate","evidences":[{"source":"PROSITE-ProRule","id":"PRU00502","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00502","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues14
DetailsBinding site: {}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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