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6DVO

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with Bavarostat

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
AHBV805

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
AASP610
AASP612
AHIS614
ASER633
ALEU634

site_idAC3
Number of Residues5
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH967

site_idAC4
Number of Residues6
Detailsbinding site for residue PRO A 804
ChainResidue
AGLU515
ATHR540
AHBV805
AEDO811
AHOH927
AHOH1023

site_idAC5
Number of Residues15
Detailsbinding site for residue HBV A 805
ChainResidue
APRO464
AGLU515
ASER531
AASN536
AHIS573
AHIS574
AGLY582
APHE583
AASP612
AHIS614
APHE643
AASP705
ATYR745
AZN801
APRO804

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO A 806
ChainResidue
AARG492
ALEU493
AASP527
AEDO809
AHOH910
AHOH922
AHOH1019

site_idAC7
Number of Residues4
Detailsbinding site for residue EDO A 807
ChainResidue
AGLU515
AHIS516
AASN536
ALEU712

site_idAC8
Number of Residues3
Detailsbinding site for residue EDO A 808
ChainResidue
ASER504
ASER505
ALYS506

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO A 809
ChainResidue
AARG524
AASP527
AGLU528
AEDO806
AHOH932

site_idAD1
Number of Residues7
Detailsbinding site for residue EDO A 810
ChainResidue
ATYR448
AASP449
AARG488
AALA491
AHOH915
AHOH920
AHOH1066

site_idAD2
Number of Residues6
Detailsbinding site for residue EDO A 811
ChainResidue
AASN457
AHIS463
ASER531
AILE532
APHE583
APRO804

site_idAD3
Number of Residues3
Detailsbinding site for residue EDO A 812
ChainResidue
AHIS684
AASN784
AHOH1036

site_idAD4
Number of Residues6
Detailsbinding site for residue EDO A 813
ChainResidue
AHIS456
AMET458
ASER535
AASN536
AGLU537
AHOH955

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PDB entries from 2024-08-14

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