Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DPP

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 5 mM Mg2+ and 200 mM Rb+ for 240 s at 21 C

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004523molecular_functionRNA-DNA hybrid ribonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG A 201
ChainResidue
AASP71
AASP192
AHOH308
AHOH313
AHOH321
bC5

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 202
ChainResidue
BU4
bC5
AASP71
AGLU109
AASP132

site_idAC3
Number of Residues10
Detailsbinding site for residue RB A 203
ChainResidue
AASP192
AGLY194
AARG195
ALYS196
ARB204
AHOH308
AHOH357
bC5
bG6
bHOH201

site_idAC4
Number of Residues7
Detailsbinding site for residue RB A 204
ChainResidue
AGLU188
AASP192
ALYS196
ARB203
AHOH308
AHOH357
bC5

site_idAC5
Number of Residues5
Detailsbinding site for residue RB A 205
ChainResidue
ALYS121
AASN124
AHOH409
AHOH410
AHOH429

site_idAC6
Number of Residues2
Detailsbinding site for residue CL A 206
ChainResidue
ATYR83
AGOL211

site_idAC7
Number of Residues2
Detailsbinding site for residue CL A 207
ChainResidue
AHOH360
AHOH440

site_idAC8
Number of Residues3
Detailsbinding site for residue CL A 208
ChainResidue
APRO177
AHOH415
AHOH447

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL A 209
ChainResidue
AGLY76
AASN77
APRO78
AHOH323
AHOH383
CDG2

site_idAD1
Number of Residues8
Detailsbinding site for residue GOL A 210
ChainResidue
AHIS115
ATYR119
AARG123
AGLU167
AASN170
AGOL211
AHOH303
AHOH364

site_idAD2
Number of Residues7
Detailsbinding site for residue GOL A 211
ChainResidue
AHIS115
AARG118
AASN170
ACL206
AGOL210
AHOH343
AHOH422

site_idAD3
Number of Residues3
Detailsbinding site for residue EDO A 212
ChainResidue
ALYS143
ATHR173
ATYR174

site_idAD4
Number of Residues3
Detailsbinding site for residue EDO A 213
ChainResidue
AGLU66
ALYS127
AHOH352

site_idAD5
Number of Residues6
Detailsbinding site for residue EDO A 214
ChainResidue
APHE95
AGLU96
ATRP168
ATHR171
AHIS172
AHOH371

site_idAD6
Number of Residues5
Detailsbinding site for residue EDO A 215
ChainResidue
ATHR148
AHOH306
AHOH351
CDT4
CDG5

site_idAD7
Number of Residues7
Detailsbinding site for residue EDO B 101
ChainResidue
ALYS196
BA1
CDT6
CRB201
CHOH304
bG6
bHOH203

site_idAD8
Number of Residues5
Detailsbinding site for residue RB b 101
ChainResidue
AASP132
AHOH326
BU4
BHOH210
bC5

site_idAD9
Number of Residues4
Detailsbinding site for residue RB C 201
ChainResidue
BEDO101
CDT4
CDG5
CHOH307

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:15989951
ChainResidueDetails
AASP192
AASP71
AGLU109
AASP132

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon