6DMD

ppGpp Riboswitch bound to ppGpp, manganese chloride structure

Functional Information from PDB Data

site_id	AC1
Number of Residues	15
Details	binding site for residue G4P A 201

Chain	Residue
A	GTP1
A	G98
A	MN202
A	MG215
A	MG218
A	HOH304
A	HOH307
A	A3
A	A4
A	G5
A	G43
A	C70
A	A71
A	C72
A	A96

---

site_id	AC2
Number of Residues	2
Details	binding site for residue MN A 202

Chain	Residue
A	A3
A	G4P201

---

site_id	AC3
Number of Residues	2
Details	binding site for residue MN A 203

Chain	Residue
A	A13
A	G14

---

site_id	AC4
Number of Residues	2
Details	binding site for residue MN A 204

Chain	Residue
A	A13
A	G14

---

site_id	AC5
Number of Residues	3
Details	binding site for residue MN A 205

Chain	Residue
A	G43
A	A87
A	C88

---

site_id	AC6
Number of Residues	2
Details	binding site for residue MN A 207

Chain	Residue
A	C44
A	C72

---

site_id	AC7
Number of Residues	2
Details	binding site for residue NA A 208

Chain	Residue
A	C11
A	A41

---

site_id	AC8
Number of Residues	1
Details	binding site for residue NA A 210

Chain	Residue
A	HOH316

---

site_id	AC9
Number of Residues	3
Details	binding site for residue NA A 212

Chain	Residue
A	A80
A	U81
A	A84

---

site_id	AD1
Number of Residues	2
Details	binding site for residue MG A 214

Chain	Residue
A	G43
A	C88

---

site_id	AD2
Number of Residues	1
Details	binding site for residue MG A 215

Chain	Residue
A	G4P201

---

site_id	AD3
Number of Residues	1
Details	binding site for residue MG A 216

Chain	Residue
A	G37

---

site_id	AD4
Number of Residues	2
Details	binding site for residue MG A 217

Chain	Residue
A	A96
A	A97

---

site_id	AD5
Number of Residues	2
Details	binding site for residue MG A 218

Chain	Residue
A	GTP1
A	G4P201

---

site_id	AD6
Number of Residues	4
Details	binding site for residue K A 219

Chain	Residue
A	A17
A	G36
A	G37
A	A38

---

site_id	AD7
Number of Residues	12
Details	binding site for residue G4P B 201

Chain	Residue
B	GTP1
B	A3
B	A4
B	G5
B	G43
B	C70
B	A71
B	C72
B	G98
B	MN202
B	MG209
B	MG210

---

site_id	AD8
Number of Residues	2
Details	binding site for residue MN B 202

Chain	Residue
B	A3
B	G4P201

---

site_id	AD9
Number of Residues	3
Details	binding site for residue MN B 203

Chain	Residue
B	G43
B	A87
B	C88

---

site_id	AE1
Number of Residues	2
Details	binding site for residue MN B 204

Chain	Residue
B	C44
B	C72

---

site_id	AE2
Number of Residues	2
Details	binding site for residue MN B 205

Chain	Residue
B	G43
B	C88

---

site_id	AE3
Number of Residues	1
Details	binding site for residue NA B 208

Chain	Residue
B	G66

---

site_id	AE4
Number of Residues	1
Details	binding site for residue MG B 209

Chain	Residue
B	G4P201

---

site_id	AE5
Number of Residues	3
Details	binding site for residue MG B 210

Chain	Residue
B	GTP1
B	G2
B	G4P201

---

site_id	AE6
Number of Residues	8
Details	binding site for Di-nucleotide GTP B 1 and G B 2

Chain	Residue
A	GTP1
A	U101
A	CCC102
B	A3
B	U101
B	CCC102
B	G4P201
B	MG210

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