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6DMC

ppGpp Riboswitch bound to ppGpp, native structure

Functional Information from PDB Data
site_idAC1
Number of Residues26
Detailsbinding site for residue G4P A 201
ChainResidue
AA3
AMG209
AMG213
AHOH303
AHOH307
AHOH311
AHOH316
AHOH319
AHOH324
AHOH325
AHOH326
AA4
AHOH341
AHOH345
AHOH350
AHOH362
AHOH373
AHOH377
AHOH399
AG5
AG43
AC70
AA71
AC72
AA96
AMG202

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 202
ChainResidue
AA3
AG4P201
AHOH350
AHOH377
AHOH384

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 203
ChainResidue
AA13
AG14
AHOH318
AHOH360
AHOH378
AHOH406

site_idAC4
Number of Residues4
Detailsbinding site for residue MG A 204
ChainResidue
AA13
AG14
AHOH323
AHOH357

site_idAC5
Number of Residues6
Detailsbinding site for residue MG A 205
ChainResidue
AG43
AA87
AC88
AHOH358
AHOH363
AHOH389

site_idAC6
Number of Residues1
Detailsbinding site for residue MG A 206
ChainResidue
AHOH314

site_idAC7
Number of Residues6
Detailsbinding site for residue MG A 207
ChainResidue
AC44
AC72
AHOH325
AHOH344
AHOH365
AHOH405

site_idAC8
Number of Residues3
Detailsbinding site for residue MG A 208
ChainResidue
AG43
AC88
AHOH301

site_idAC9
Number of Residues6
Detailsbinding site for residue MG A 209
ChainResidue
AG4P201
AHOH307
AHOH311
AHOH345
AHOH395
AHOH399

site_idAD1
Number of Residues6
Detailsbinding site for residue MG A 210
ChainResidue
AHOH326
AHOH353
AHOH366
AHOH368
AHOH421
AHOH422

site_idAD2
Number of Residues6
Detailsbinding site for residue MG A 211
ChainResidue
AG37
AHOH313
AHOH334
AHOH346
AHOH386
AHOH418

site_idAD3
Number of Residues3
Detailsbinding site for residue MG A 212
ChainResidue
AA96
AA97
AHOH309

site_idAD4
Number of Residues2
Detailsbinding site for residue MG A 213
ChainResidue
AGTP1
AG4P201

site_idAD5
Number of Residues2
Detailsbinding site for residue NA A 214
ChainResidue
AC11
AA41

site_idAD6
Number of Residues3
Detailsbinding site for residue NA A 215
ChainResidue
AHOH321
AHOH374
AHOH425

site_idAD7
Number of Residues6
Detailsbinding site for residue NA A 217
ChainResidue
AHOH327
AHOH330
AHOH332
AHOH347
AHOH419
AHOH424

site_idAD8
Number of Residues4
Detailsbinding site for residue K A 220
ChainResidue
AA17
AG36
AG37
AA38

site_idAD9
Number of Residues18
Detailsbinding site for residue G4P B 201
ChainResidue
BG5
BG43
BC70
BA71
BC72
BC73
BA96
BG98
BU99
BMG202
BMG208
BMG210
BHOH302
BHOH311
BGTP1
BG2
BA3
BA4

site_idAE1
Number of Residues2
Detailsbinding site for residue MG B 202
ChainResidue
BA3
BG4P201

site_idAE2
Number of Residues3
Detailsbinding site for residue MG B 203
ChainResidue
BG43
BA87
BC88

site_idAE3
Number of Residues5
Detailsbinding site for residue MG B 204
ChainResidue
BC44
BC72
BHOH302
BHOH332
BHOH339

site_idAE4
Number of Residues4
Detailsbinding site for residue MG B 205
ChainResidue
BG43
BC88
BHOH305
BHOH337

site_idAE5
Number of Residues5
Detailsbinding site for residue MG B 206
ChainResidue
AHOH305
BG28
BHOH303
BHOH313
BHOH326

site_idAE6
Number of Residues3
Detailsbinding site for residue MG B 207
ChainResidue
BHOH308
BHOH317
BHOH321

site_idAE7
Number of Residues1
Detailsbinding site for residue MG B 208
ChainResidue
BG4P201

site_idAE8
Number of Residues1
Detailsbinding site for residue MG B 209
ChainResidue
BG36

site_idAE9
Number of Residues2
Detailsbinding site for residue MG B 210
ChainResidue
BGTP1
BG4P201

site_idAF1
Number of Residues3
Detailsbinding site for residue NA B 211
ChainResidue
BHOH306
BHOH329
BHOH330

site_idAF2
Number of Residues4
Detailsbinding site for residue NA B 212
ChainResidue
BG32
BHOH323
BHOH327
BHOH342

site_idAF3
Number of Residues3
Detailsbinding site for residue NA B 213
ChainResidue
BG66
BHOH312
BHOH314

site_idAF4
Number of Residues11
Detailsbinding site for Di-nucleotide GTP B 1 and G B 2
ChainResidue
AGTP1
AU101
ACCC102
BA3
BC95
BU101
BCCC102
BG4P201
BMG210
BHOH325
BHOH334

221371

PDB entries from 2024-06-19

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