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6DIF

Wild-type HIV-1 protease in complex with tipranavir

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
B0004190molecular_functionaspartic-type endopeptidase activity
B0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue NA A 501
ChainResidue
AASP60
AHOH608
AHOH632
AHOH646
AHOH662
AHOH680

site_idAC2
Number of Residues3
Detailsbinding site for residue CL A 502
ChainResidue
ATHR74
AASN88
AHOH695

site_idAC3
Number of Residues3
Detailsbinding site for residue CL A 503
ChainResidue
AGLN18
ASER37
AHOH688

site_idAC4
Number of Residues5
Detailsbinding site for residue GOL A 504
ChainResidue
ALYS45
AMET46
AHOH604
AHOH641
AHOH655

site_idAC5
Number of Residues37
Detailsbinding site for residue TPV B 201
ChainResidue
AARG8
ALEU23
AASP25
AGLY27
AALA28
AASP29
AASP30
AILE47
AGLY48
AGLY49
AILE50
APRO81
AVAL82
AHOH601
AHOH614
AHOH620
AHOH641
AHOH642
BARG8
BLEU23
BASP25
BGLY27
BALA28
BASP29
BASP30
BILE47
BGLY48
BGLY49
BILE50
BPRO81
BVAL82
BILE84
BGOL203
BHOH312
BHOH317
BHOH331
BHOH402

site_idAC6
Number of Residues4
Detailsbinding site for residue CL B 202
ChainResidue
BTHR74
BASN88
BHOH333
BHOH397

site_idAC7
Number of Residues8
Detailsbinding site for residue GOL B 203
ChainResidue
BALA28
BASP29
BILE47
BGLY48
BTPV201
BHOH317
BHOH322
BHOH331

site_idAC8
Number of Residues7
Detailsbinding site for residue GOL B 204
ChainResidue
ALEU5
ATRP6
BARG87
BASN88
BTHR91
BHOH301
BHOH307

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. ALLDTGADDTVI
ChainResidueDetails
AALA22-ILE33

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI2
Number of Residues20
DetailsRegion: {"description":"Dimerization of protease","evidences":[{"source":"PubMed","id":"2162350","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsActive site: {"description":"For protease activity; shared with dimeric partner","evidences":[{"source":"PROSITE-ProRule","id":"PRU10094","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"33542150","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 175
ChainResidueDetails
AASP25hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
ATHR26electrostatic stabiliser, transition state stabiliser
AGLY27electrostatic stabiliser, hydrogen bond donor

site_idMCSA2
Number of Residues3
DetailsM-CSA 175
ChainResidueDetails
BASP25hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BTHR26electrostatic stabiliser, transition state stabiliser
BGLY27electrostatic stabiliser, hydrogen bond donor

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PDB entries from 2025-07-16

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