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6DBY

Crystal structure of Nudix 1 from Arabidopsis thaliana

Functional Information from GO Data
ChainGOidnamespacecontents
A0000210molecular_functionNAD+ diphosphatase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006203biological_processdGTP catabolic process
A0006950biological_processresponse to stress
A0006974biological_processDNA damage response
A0008413molecular_function8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
A0016787molecular_functionhydrolase activity
A0019177molecular_functiondihydroneopterin triphosphate pyrophosphohydrolase activity
A0035529molecular_functionNADH pyrophosphatase activity
A0035539molecular_function8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity
A0046872molecular_functionmetal ion binding
B0000210molecular_functionNAD+ diphosphatase activity
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006203biological_processdGTP catabolic process
B0006950biological_processresponse to stress
B0006974biological_processDNA damage response
B0008413molecular_function8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
B0016787molecular_functionhydrolase activity
B0019177molecular_functiondihydroneopterin triphosphate pyrophosphohydrolase activity
B0035529molecular_functionNADH pyrophosphatase activity
B0035539molecular_function8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG A 201
ChainResidue
AHOH324
AHOH327
AHOH335
AHOH383
AHOH397
AHOH414

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GhlefgEsfeeCAaREVmEEtG
ChainResidueDetails
AGLY41-GLY62

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues266
DetailsDomain: {"description":"Nudix hydrolase","evidences":[{"source":"PROSITE-ProRule","id":"PRU00794","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues42
DetailsMotif: {"description":"Nudix box"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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