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6DB2

X-ray crystal structure of VioC bound to vanadyl ion, L-homoarginine, and succinate

Functional Information from GO Data
ChainGOidnamespacecontents
A0005506molecular_functioniron ion binding
A0016020cellular_componentmembrane
A0016491molecular_functionoxidoreductase activity
A0016706molecular_function2-oxoglutarate-dependent dioxygenase activity
A0017000biological_processantibiotic biosynthetic process
A0046872molecular_functionmetal ion binding
A0102525molecular_function2-oxoglutarate, L-arginine oxygenase (succinate-forming) activity
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue SIN A 401
ChainResidue
AVAL146
AVVO403
AHOH523
ALEU165
AHIS168
ATHR194
AHIS316
AARG318
AARG330
ALEU332
AARG334

site_idAC2
Number of Residues16
Detailsbinding site for residue HRG A 402
ChainResidue
AGLN137
ALEU156
AVAL157
ASER158
ALEU165
AGLY166
AHIS168
AGLU170
AASP222
ASER224
AASP268
AASP270
AARG334
AVVO403
AHOH536
AHOH653

site_idAC3
Number of Residues6
Detailsbinding site for residue VVO A 403
ChainResidue
AHIS168
AGLU170
AHIS316
AARG334
ASIN401
AHRG402

site_idAC4
Number of Residues9
Detailsbinding site for residue EDO A 404
ChainResidue
ATHR102
APRO103
ATYR325
AASP326
AGLY327
AARG328
AASP329
AHOH521
AHOH596

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 405
ChainResidue
ALYS150
AGLU279
AALA283
ATYR325

site_idAC6
Number of Residues6
Detailsbinding site for residue EDO A 406
ChainResidue
AALA97
AALA98
AGLY100
AASP202
AHOH509
AHOH524

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsTRANSMEM: Helical => ECO:0000255
ChainResidueDetails
ALEU117-ALA135

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING:
ChainResidueDetails
ALEU156
AHIS168
AGLU170
ATHR194
AASP268
AHIS316
AARG330
AARG334

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PDB entries from 2024-08-14

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