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6CW8

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with RTS-V5

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
AFGY804
AHOH903

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
ALEU634
AASP610
AASP612
AHIS614
ASER633

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH975
AHOH994

site_idAC4
Number of Residues26
Detailsbinding site for residue FGY A 804
ChainResidue
AHIS463
APRO464
AASN530
ASER531
AHIS574
AGLY582
APHE583
AASP612
AHIS614
APHE643
AASP705
AGLY743
ATYR745
AZN801
AEDO809
AHOH903
AHOH916
AHOH981
AHOH1053
AHOH1054
AHOH1088
BHIS684
BLEU775
BTHR780
BASN784
BLEU787

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 805
ChainResidue
AHIS462
AASP652
AVAL654
AHOH937
AHOH1140

site_idAC6
Number of Residues8
Detailsbinding site for residue EDO A 806
ChainResidue
AASP639
AASN650
ATYR651
AASN669
AHOH922
AHOH968
AHOH1023
AHOH1138

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO A 807
ChainResidue
ALEU557
ATHR600
AHOH920
AHOH938
AHOH1036

site_idAC8
Number of Residues6
Detailsbinding site for residue EDO A 808
ChainResidue
AGLU496
ASER505
ASER505
ALYS506
AHOH933
AHOH1022

site_idAC9
Number of Residues3
Detailsbinding site for residue EDO A 809
ChainResidue
ASER531
AFGY804
AHOH916

site_idAD1
Number of Residues5
Detailsbinding site for residue ZN B 801
ChainResidue
BASP612
BHIS614
BASP705
BFGY804
BHOH902

site_idAD2
Number of Residues5
Detailsbinding site for residue K B 802
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAD3
Number of Residues6
Detailsbinding site for residue K B 803
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH996
BHOH1028

site_idAD4
Number of Residues24
Detailsbinding site for residue FGY B 804
ChainResidue
BASN645
BASP705
BGLY743
BTYR745
BZN801
BEDO807
BEDO808
BHOH902
BHOH914
BHOH956
AHIS684
AILE783
AASN784
ALEU787
BHIS463
BPRO464
BASN530
BSER531
BHIS574
BGLY582
BPHE583
BASP612
BHIS614
BPHE643

site_idAD5
Number of Residues5
Detailsbinding site for residue EDO B 805
ChainResidue
BMET453
BLEU454
BHIS456
BPRO467
BGLU537

site_idAD6
Number of Residues7
Detailsbinding site for residue EDO B 806
ChainResidue
BASN523
BGLY526
BASP527
BILE532
BPHE533
BEDO807
BHOH1031

site_idAD7
Number of Residues7
Detailsbinding site for residue EDO B 807
ChainResidue
BHIS463
BSER531
BILE532
BPHE583
BFGY804
BEDO806
BEDO808

site_idAD8
Number of Residues7
Detailsbinding site for residue EDO B 808
ChainResidue
AASN784
AARG788
BFGY804
BEDO807
BHOH901
BHOH908
BHOH948

223166

PDB entries from 2024-07-31

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